 |
Job Description | P77473 | Confidence | 85.39% | Date | Thu Jan 5 12:29:36 GMT 2012 |
Rank | 111 | Aligned Residues | 103 |
% Identity | 17% | Template | c2v82A_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; |
PDBTitle: kdpgal complexed to kdpgal
|
Resolution | 2.1 Å |
|
 |
  |   |
406 | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | |
|
. | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | I | I | S | R | Y | R | E | A | G | H | E | I | Y | L | D | D | F | G | T | G | Y | S | S | L | S | Y | L | Q | D | L | D | V | D | I | L | K | I | D | K | S | F | V | D | A | L | E | Y | K | N | V | T | P | H | I | I | E | M | A | K | T | L | . |
. |
K | L | K | M | V | A | E | G | I | E | T | S | K | Q | E |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
| . | . |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
| . | . |
|   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |   |   |
|
|
Template Sequence |   |
S | E | V | I | R | R | A | V | G | Y | G | X | T | V | C | P | G | . |
. |
C | A | T | A | T | E | A | F | T | A | L | E | A | G | A | Q | A | L | K | I | F | P | S | S | A | F | G | . |
. |
. |
. |
. |
. |
P | Q | Y | I | K | A | L | K | A | V | L | P | S | D | I | A | V | F | A | V | G | G | V | T | P | E | N | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
|  | . | . |  |
| S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | T | T |  |  |  |  |
| . | . | . | . | . | . |  |  |  |  |  |  |  |  | T | T | S |
| T | T |
|  |  |  |  |  | S | S |
|
| T | T | T |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . |
  |
  |   |
484 | . | . | . | . | . | 490 | . | . | |
|
. | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
| . | . |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | W | L | R | Q | H | G | V | H | . |
. |
Y | G | Q | G | W | L | Y | S | K | A | L | P | K | E | D | F | L | R | W | A | E | Q | H | L |
Query Conservation |   |
  |   |
|   |   |   |
|   |   | . | . |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |
|   |
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | Q | W | I | D | A | G | C | A | G | A | G | L | G | S | D | L | Y | R | A | G | Q | S | V | E | R | T | A | Q | Q | A | A | A | F | V |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
| S |  |  |  |  |
| T | T | T |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
163 | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|