Job Description P09832 Confidence 100.00% Date Thu Jan 5 11:02:29 GMT 2012 Rank 10 Aligned Residues 301 % Identity 21% Template c3ntaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase Resolution 2.01 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																.	.	.														.	.
Query SS confidence																									.	.																.	.	.														.	.
Query Sequence		K	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	.	.	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	.	.	.	L	T	F	G	I	P	A	F	K	L	E	K	E	.	.	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E	V
Query Conservation																									.	.																.	.	.														.	.
Alig confidence																									.	.																.	.	.														.	.
Template Conservation
Template Sequence		K	K	I	L	I	I	G	G	V	A	G	G	A	S	A	A	A	R	A	R	R	L	S	E	T	A	E	I	I	X	F	E	R	G	E	Y	V	S	F	A	N	C	G	L	P	Y	H	I	S	G	E	I	A	Q	R	S	A	L	V	L	Q	T	P	E	S	F	K	A	R	F	N	V	E	V	R	V	K	H	E	V
Template Known Secondary structure										S	T	T													S	S								S	S	S		S	S	B		G	G	G						T	S	S	S			G	G	G	G	B																	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
								220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.											.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.											.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	R	D	V	Q	L	D	D	L	L	.	.	.	.	.	.	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G
Query Conservation		.	.	.	.	.	.											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.											.	.	.	.	.	.													.																			.	.	.	.	.	.	.	.	.
Template Conservation																																				.																			.	.	.	.	.	.	.	.	.
Template Sequence		V	A	I	D	R	A	A	K	L	V	T	V	R	R	L	L	D	G	S	E	Y	Q	E	S	Y	D	T	L	L	L	S	P	G	A	.	A	P	I	V	P	P	I	P	G	V	D	N	P	L	T	H	S	L	.	.	.	.	.	.	.	.	.	R	N	I	P	D	X	D	R	I	L	Q	T	I	Q	X	N	N	V
Template Known Secondary structure						T	T	T	T							T	T	T									S									.								T	T			S	T	T					.	.	.	.	.	.	.	.	.	S	S														T	T
Template Predicted Secondary structure																																				.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.										.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.					.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		K	R	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	S	V	R	Q	G	A	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	S	R	R	E	.	.	.	.	V	K	N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G	N	G	K	V	S	G	V	K
Query Conservation																																														.	.	.	.
Alig confidence																										.																				.	.	.	.																												.	.	.
Template Conservation																										.																																																			.	.	.
Template Sequence		E	H	A	T	V	V	G	G	G	F	I	G	L	E	X	X	E	S	L	H	H	L	G	I	.	K	T	T	L	L	E	L	A	D	Q	V	X	T	P	V	D	R	E	X	A	G	F	A	H	Q	A	I	R	D	Q	G	V	D	L	R	L	G	T	A	L	S	E	V	S	Y	Q	V	Q	T	H	.	.	.	V	A
Template Known Secondary structure		S								S													T	T		.							S	S	S	S	S		S	S	S															T	T						S														.	.	.
Template Predicted Secondary structure																										.																																																			.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	R	T	E	M	G	E	P	D	A	K	G	R	R	R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	T	S	N	P	K	I	F	A	G	G
Query Conservation
Alig confidence																																													.																		.	.	.	.
Template Conservation																																													.																		.	.	.	.
Template Sequence		S	D	A	A	G	E	D	T	A	H	Q	H	I	K	G	H	L	S	L	T	L	S	N	G	E	L	L	E	T	D	L	L	I	X	A	I	G	V	R	P	E	T	Q	.	L	A	R	D	A	G	L	A	I	G	E	L	G	G	I	K	V	.	.	.	.	N	A	X	X	Q	T	S	D	P	A	I	Y	A	V	G
Template Known Secondary structure			T	T	T	T				T	T			T	T								T	T	S						S						S								.					T	T			B		T	T	S	S	B			.	.	.	.		T	T		B		S	S	T	T					S
Template Predicted Secondary structure																																													.																		.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		444	.	.	.	.	.											450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	V	R	G	S	.	.	.	.	.	.	.	.	.	.	D	L	V	V	T	A	I	A	E	G	R	K	A	A	D	G	I
Query Conservation								.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	V	E	E	Q	D	F	V	T	G	Q	A	C	L	V	P	L	A	G	P	A	N	R	Q	G	R	X	A	A	D	N	X
Template Known Secondary structure		T	T	B				B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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