Job Description P09832 Confidence 99.95% Date Thu Jan 5 11:02:29 GMT 2012 Rank 73 Aligned Residues 296 % Identity 18% Template c3kpgA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone Resolution 2.30 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																								.	.	.																	.	.
Query SS confidence																								.	.	.																	.	.
Query Sequence		K	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	.	.	.	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	.	.	L	T	F	G	I	P	A	F	K	L	E	K	E	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E	V	G	R
Query Conservation																								.	.	.																	.	.
Alig confidence																								.	.	.																	.	.
Template Conservation
Template Sequence		A	H	V	V	I	L	G	A	G	T	G	G	M	P	A	A	Y	E	M	K	E	A	L	G	S	G	H	E	V	T	L	I	S	A	N	D	Y	F	Q	F	V	P	S	N	P	W	V	G	V	G	W	K	E	R	D	D	I	A	F	P	I	R	H	Y	V	E	R	K	G	I	H	F	I	A	Q	S	A	E	Q	I
Template Known Secondary structure										S	T	T														T	T	S							S	S	S					G	G	G							T	S	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		222						.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.						.
Query SS confidence			.	.	.	.	.						.
Query Sequence		D	.	.	.	.	.	V	Q	L	D	D	.	L	L	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G	K	R	V	V	V	L	G	G
Query Conservation			.	.	.	.	.						.
Alig confidence			.	.	.	.	.						.																					.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		D	A	E	A	Q	N	I	T	L	A	D	G	N	T	V	H	Y	D	Y	L	M	I	A	T	G	P	K	L	A	F	E	N	.	.	.	.	.	.	V	P	G	S	D	P	H	E	G	P	V	Q	S	I	C	T	V	D	H	A	E	R	A	F	A	E	Y	Q	A	L	L	R	E	P	G	P	I	V	I	G	A	M
Template Known Secondary structure			T	T	T	T					T	T	S						S												G	G	G	.	.	.	.	.	.	S	T	T		S	T	T	T	S	S					S	S																	S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		296										.	.	.	300	.	.	.	.	.	.	.	.	.	310	.					.	.	.	.	.	.	.	.	320	.	.	.	.	.								.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																.	.	.	.															.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.																.	.	.	.															.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	D	T	A	M	D	C	V	R	T	S	V	R	Q	G	A	.	.	.	.	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	.	.	.	.	.	.	.	P	G	S	R	R	E	V	K	N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G
Query Conservation			.	.	.	.	.	.	.	.	.																.	.	.	.															.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																.	.	.	.															.	.	.	.	.	.	.																												.	.
Template Conservation																																																																															.	.
Template Sequence		A	G	A	S	C	F	G	P	A	Y	E	Y	A	M	I	V	A	S	D	L	K	K	R	G	M	R	D	K	I	P	S	F	T	F	I	T	S	E	P	Y	I	G	H	L	G	I	Q	G	V	G	D	S	K	G	I	L	T	K	G	L	K	E	E	G	I	E	A	Y	T	N	C	K	V	T	K	V	E	.	.	D
Template Known Secondary structure		T	T																						T		G	G	G		S							S	S	S	S	T	T		T	T	T	T			T	T												T	T						S								.	.	T
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		N	G	K	V	S	G	V	K	M	V	R	T	E	M	G	E	P	D	A	K	G	R	R	R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	.	T
Query Conservation																																																																																.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																			.	.	.	.						.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																			.	.	.	.
Template Sequence		N	K	M	Y	V	T	Q	V	D	E	K	G	E	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	M	V	L	P	V	K	F	G	M	M	I	P	A	F	K	G	V	.	.	P	A	V	A	G	V	E	G	L	C	N	P	G	G	F	V	L	V	.	.	.	.	D	E	H	Q	R	S	K
Template Known Secondary structure		T									T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S												.	.					T	S	T	T	T	B		T	T	S		B		B	.	.	.	.		T	T	S	B	B	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																			.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.																.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.													.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	P	K	I	F	A	G	G	D	I	V	R	.	.	.	.	.	.	.	.	.	.	.	.	G	S	D	L	V	V	T	A	I	A	E	G	R	K	A	A	D	G	I	M	N	W	L	E
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	Y	A	N	I	F	A	A	G	I	A	I	A	I	P	P	V	E	T	T	P	V	P	T	G	A	P	K	T	G	Y	M	I	E	S	M	V	S	A	A	V	H	N	I	K	A	D	L	E
Template Known Secondary structure		S		T	T					G	G	G	B					S				S	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions