Job Description P09832 Confidence 99.97% Date Thu Jan 5 11:02:29 GMT 2012 Rank 29 Aligned Residues 251 % Identity 23% Template c3iwaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris Resolution 2.30 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		K	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	.	.	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	L	T	F	G	I	P	A	F	K	L	E	K	E	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E	V	G	R	D	V	Q
Query Conservation																								.	.
Alig confidence																								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	V	V	V	I	G	A	V	A	L	G	P	K	A	A	C	R	F	K	R	L	D	P	E	A	H	V	T	M	I	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	E	A	L	V	E	T	R	A	H	A	I	D	R
Template Known Secondary structure										S	S														T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S								T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																																	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
		225	.	.	.	.													230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G	K	R	V	V	V
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	H	T	V	E	I	E	N	L	R	T	G	E	R	R	T	L	K	Y	D	K	L	V	L	A	L	G	.	.	.	.	.	.	.	.	.	.	S	K	A	N	R	P	P	V	E	G	M	D	L	A	G	V	T	P	V	T	N	L	D	E	A	E	F	V	Q	H	A	I	S	A	G	E	V	S	K	A	V	I
Template Known Secondary structure		T	T	T							T	T	T									S								.	.	.	.	.	.	.	.	.	.							S		T	T	T	T	S	B	T						S													T	T	S		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		L	G	G	G	D	T	A	M	D	C	V	R	T	S	V	R	Q	G	A	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	S	R	R	E	V	K	N	.	.	.	.	.	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G	N	G	K	V	S	G	V	K	M	V	R	T
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	G	G	F	I	G	L	E	M	A	V	S	L	A	D	M	W	G	I	D	T	T	V	V	E	L	A	D	Q	I	M	P	G	F	T	S	K	S	L	S	Q	M	L	R	H	D	L	E	K	N	D	V	V	V	H	T	G	E	K	V	V	R	L	E	G	E	N	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S																							S	S	S	S	S	S	T	T	T	S															T	T						S									S	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	G	E	P	D	A	K	G	R	R	R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	T	S	N	P	K	I	F	A	G	G	D	I	V	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																														.																		.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																														.																		.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	G	K	V	A	R	V	I	T	D	K	R	T	L	D	A	D	L	V	I	L	A	A	G	V	S	P	N	T	Q	.	L	A	R	D	A	G	L	E	L	D	P	R	G	A	I	I	V	.	.	.	.	D	T	R	M	R	T	S	D	P	D	I	F	A	G	G	D	C	V	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S	B							S	S						S						S								.						T			B		T	T						.	.	.	.		T	T		B		S	S	T	T					G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																														.																		.	.	.	.
Template SS confidence
												232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		448	.											450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	.	.	.	.	.	.	.	.	.	.	D	L	V	V	T	A	I	A	E	G	R	K	A	A	D	G	I
Query Conservation				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	N	L	V	T	G	K	P	G	F	F	P	L	G	S	M	A	N	R	Q	G	R	V	I	G	T	N	L
Template Known Secondary structure				B	T	T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions