Phyre 2 alignment of P09832 with c3h8lA

Job Description P09832
Confidence 99.92% Date Thu Jan 5 11:02:29 GMT 2012

Rank 82 Aligned Residues 293

% Identity 19% Template c3h8lA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism

Resolution 2.57 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																						.	.	.																	.	.
Query SS confidence																						.	.	.																	.	.
Query Sequence	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	.	.	.	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	.	.	L	T	F	G	I	P	A	F	K	L	E	K	E	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E	V	G	R	D
Query Conservation																						.	.	.																	.	.
Alig confidence																						.	.	.																	.	.
Template Conservation
Template Sequence	K	V	L	V	L	G	G	R	F	G	A	L	T	A	A	Y	T	L	K	R	L	V	G	S	K	A	D	V	K	V	I	N	K	S	R	F	S	Y	F	R	P	A	L	P	H	V	A	I	G	V	R	D	V	D	E	L	K	V	D	L	S	E	A	L	P	E	K	G	I	Q	F	Q	E	G	T	V	E	K	I	D
Template Known Secondary structure							S	S															G	G	G	S							S	S	S							S	S					S	S															T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	223	.	.	.	.	.	.	230											.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.														.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	Q	L	D	D	L	L	S	.	.	.	.	.	.	.	.	.	.	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D
Query Conservation									.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	K	S	S	M	V	Y	Y	T	K	P	D	G	S	M	A	E	E	E	Y	D	Y	V	I	V	G	I	G	A	H	L	A	T	E	L	V	K	G	W	D	K	Y	G	Y	S	V	C	E	P	E	F	A	T	K	L	R	E	K	L	E	S	F	Q	G	G	N	I	A	I	G	S	G	P	F	Y	Q	G	H	N	P
Template Known Secondary structure	T	T	T	T							T	T	S								S												G	G	G	S	B	T								S	S	S	T	T														S										B					S	S
Template Predicted Secondary structure
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.							310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.																								.	.	.	.
Query SS confidence																															.	.	.	.	.	.																								.	.	.	.
Query Sequence	E	P	F	V	S	M	E	G	K	R	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	S	V	R	Q	.	.	.	.	.	.	G	A	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	S	R	R	E	V	.	.	.	.	K	N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L
Query Conservation																															.	.	.	.	.	.																								.	.	.	.
Alig confidence																															.	.	.	.	.	.																								.	.	.	.
Template Conservation
Template Sequence	K	P	K	V	P	E	N	F	V	P	N	A	D	S	A	C	E	G	P	V	F	E	M	S	L	M	L	H	G	Y	F	K	K	K	G	M	L	D	K	V	H	V	T	V	F	S	P	G	E	Y	L	S	D	L	S	P	N	S	R	K	A	V	A	S	I	Y	N	Q	L	G	I	K	L	V	H	N	F	K	I	K
Template Known Secondary structure			B	S		T	T	S	S				S		S	S																	T	T	T		T	T	T								S	S	S	S	S	T	T	S																T						S
Template Predicted Secondary structure
Template SS confidence
	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	I	E	V	N	G	N	G	K	V	S	G	V	K	M	V	R	T	E	M	G	E	P	D	A	K	G	R	R	R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																				.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																				.	.	.	.
Template Sequence	E	I	R	E	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	D	E	K	G	N	T	I	P	A	D	I	T	I	L	L	P	P	Y	T	G	N	.	P	A	L	K	N	S	T	P	D	L	V	D	D	G	G	F	I	P	T	.	.	.	.	D
Template Known Secondary structure				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S						S												.					T	S		G	G	G	S		T	T	S		B		B	.	.	.	.	B
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																				.	.	.	.
Template SS confidence
	243	.	.	.	.	.																											.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.

	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.	.			.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure					.															.	.
Query SS confidence					.															.	.
Query Sequence	N	A	F	Q	.	T	S	N	P	K	I	F	A	G	G	D	I	V	R	.	.	G	S	D	L	V	V	T	A	I	A	E	G	R	K	A	A	D	G	I	M	N	W	L	E
Query Conservation					.															.	.
Alig confidence					.															.	.
Template Conservation
Template Sequence	L	N	M	V	S	I	K	Y	D	N	V	Y	A	V	G	D	A	N	S	M	T	V	P	K	L	G	Y	L	A	V	M	T	G	R	I	A	A	Q	H	L	A	N	R	L	G
Template Known Secondary structure	T	T	S	B	B	S	S		T	T					G	G	G	B	T	T			S																					T	T
Template Predicted Secondary structure
Template SS confidence
	292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions