Job Description P09832 Confidence 99.96% Date Thu Jan 5 11:02:29 GMT 2012 Rank 46 Aligned Residues 296 % Identity 21% Template c2q0lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ Resolution 1.45 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.
Query Sequence		K	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	L	T	F	G	.	.	.	.	.	.	.	.	I	P	A	F	K	L	E	K	E	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E
Query Conservation																																												.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	C	A	I	I	G	G	G	P	A	G	L	S	A	G	L	Y	A	T	R	G	G	V	K	N	A	V	L	F	E	K	G	M	P	G	G	Q	I	T	G	S	S	E	I	E	N	Y	P	G	V	K	E	V	V	S	G	L	D	F	M	Q	P	W	Q	E	Q	C	F	R	F	G	L	K	H	E	M	T	A	V
Template Known Secondary structure										S													T	T		S	S						S	S	S	T	T		G	G	G	G		S		B			S	T	T			S		B															T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	R	D	V	Q	L	D	D	L	L	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G	K	R	V	V	V	L	G	G	G	D	T
Query Conservation
Alig confidence						.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.
Template Sequence		Q	R	V	S	.	.	.	.	.	.	.	K	K	D	S	H	F	V	I	L	A	E	D	G	K	T	F	E	A	K	S	V	I	I	A	T	G	G	S	P	K	R	T	G	I	K	G	E	S	E	Y	W	G	K	G	V	S	T	C	A	T	C	D	G	F	F	Y	K	N	K	E	V	A	V	L	G	G	G	D	T
Template Known Secondary structure						.	.	.	.	.	.	.			T	T							T	T	S																						B	T					B	T	T	T			S						G	G	G	G	T	T	S								S
Template Predicted Secondary structure						.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	D	C	V	R	T	S	V	R	Q	G	A	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	S	R	R	E	V	K	N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G	N	G	K	V	S	G	V	K	M	V	R	T	E	M	G	E	P	D	A	K	G	R	R
Query Conservation
Alig confidence															.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	E	E	A	I	Y	L	A	N	I	C	K	.	.	K	V	Y	L	I	H	R	R	D	G	F	R	C	A	P	I	T	L	E	H	A	K	N	N	D	K	I	E	F	L	T	P	Y	V	V	E	E	I	K	G	D	A	S	G	V	S	S	L	S	I	K	N	T	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	S	S	.	.							S	S	S	S			S										T		T	T					T	T										T	T										T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.
Predicted Secondary structure																															.	.	.																																								.
Query SS confidence																															.	.	.																																								.
Query Sequence		R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	.	.	.	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	T	S	N	P	K	I	F	A	G	G	D	I	V	.	R	G	S	D	L	V	V	T
Query Conservation																															.	.	.																																								.
Alig confidence		.	.	.	.	.																									.	.	.																		.	.	.	.																			.
Template Conservation		.	.	.	.	.																																													.	.	.	.
Template Sequence		.	.	.	.	.	T	N	E	K	R	E	L	V	V	P	G	F	F	I	F	V	G	Y	D	V	N	N	A	V	L	K	Q	E	D	N	S	M	L	C	K	C	D	E	Y	G	S	I	V	V	.	.	.	.	D	F	S	M	K	T	N	V	Q	G	L	F	A	A	G	D	I	R	I	F	A	P	K	Q	V	V	C
Template Known Secondary structure		.	.	.	.	.	T									S						S							G	G	G	B		T	T	S		B	S	S		B		T	T	S		B			.	.	.	.		T	T		B		S	S	T	T					S	T	T	B	T	T
Template Predicted Secondary structure		.	.	.	.	.																																													.	.	.	.
Template SS confidence
							222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	A	E	G	R	K	A	A	D	G	I	M	N	W	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	S	D	G	A	T	A	A	L	S	V	I	S	Y	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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