Job Description P09832 Confidence 99.68% Date Thu Jan 5 11:02:29 GMT 2012 Rank 115 Aligned Residues 293 % Identity 16% Template c2gmhA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone Resolution 2.50 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.										.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	R	P	D	M	S	G	V	K	Q	T	G	K	K	.	.	.	.	.	.	.	.	.	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	.	.	.	.	.	.	N	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	L	T	F	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	P	R	D	Q	D	K	R	W	E	G	V	N	M	E	R	F	A	E	E	A	D	V	V	I	V	G	A	G	P	A	G	L	S	A	A	T	R	L	K	Q	L	A	A	Q	H	E	K	D	L	R	V	C	L	V	E	K	A	A	H	I	G	A	H	T	L	S	G	A	C	L	D	P	R	A	F	E	E	L
Template Known Secondary structure		T	S		T	T	S		G	G	G	S	S											S							S																	T	T										S	S	S	S	T	T	T	T									T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		189	190	.	.	.	.	.																																											.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	A	F	K	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E	V	G	R	D	V	Q	L	D
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																											.
Template Sequence		F	P	D	W	K	E	K	G	A	P	L	N	T	P	V	T	E	D	R	F	G	I	L	T	E	K	Y	R	I	P	V	P	I	L	P	G	L	P	M	N	N	H	G	N	Y	V	V	R	L	G	H	L	V	S	W	M	G	E	Q	A	E	A	L	G	V	E	V	Y	P	G	Y	A	A	.	A	E	I	L	F	H
Template Known Secondary structure			T	T					T																	S	S									T	T	S	T	T			T	T																				T	T					T	T				.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	L	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G	K	R	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	S
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	G	S	V	K	G	I	A	T	N	D	V	G	I	Q	K	D	G	A	P	K	T	T	F	E	R	G	L	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	K	V	T	I	F	A	E	G	C	H	G	H	L	A	K	Q	L	Y
Template Known Secondary structure		T	T	S	S													T	T	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S								T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																														.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		307	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure						.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.
Query Sequence		V	R	Q	G	.	.	.	.	.	.	A	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	S	R	R	E	V	K	N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G	N	G	K	V	S	G	V	K	M	V	R	T	E	M	G	E	P	D	A	K	G	R	R	R	A
Query Conservation						.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	F	D	L	R	A	N	C	E	P	Q	T	Y	G	I	G	L	K	E	L	W	V	I	D	E	K	K	W	K	P	G	R	V	D	H	T	V	G	W	P	L	D	R	H	T	Y	G	G	S	F	L	Y	H	L	N	E	G	E	P	L	L	A	L	G	F	V	V	G	L	D	Y	Q	N	P	Y	L	S	P	F
Template Known Secondary structure				T	T	T	T	T	T	S																	G	G	G			T	T								T	T	S		T	T	S											S	S	S											T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.						.	450	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	T	S	N	P	K	I	F	A	G	G	D	I	V	R	G	.	.	.	.	.	S	D	L	V	V	T	A
Query Conservation																																																																						.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.															.																																					.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		R	E	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	K	H	H	P	S	I	K	P	T	L	E	G	.	G	K	R	I	A	Y	G	A	R	A	L	N	E	G	G	F	Q	S	I	P	K	L	T	F	P	G	G	L	L	I	G	C	S	P	G	F	M	N	V	P	K	I	K	G	T	H	T	A
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S	T	T	T					T	T	.															G	G	G	G							T	T					T	T	T	T				B	T	T	T	T	B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		305	.	.	.														.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	G	R	K	A	A	D	G	I	M	N	W	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	S	G	T	L	A	A	E	S	I	F	N	Q	L	T
Template Known Secondary structure																	T
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions