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Job DescriptionP09832
Confidence99.96%DateThu Jan 5 11:02:29 GMT 2012
Rank39Aligned Residues292
% Identity24%Templatec2eq7B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  KVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDD
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Template Sequence  DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLR. . . VGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA
Template Known Secondary structure 

STT

SSSSSS...S

TT


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   3......10.........20.........30.........40.. .......50.........60.........70.........
 
   228.230.........240.........250.. .......260.........270.........
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Query Sequence  LLSDYDAVFLGVGTYQSMRGGLENE. . . . . . . . . . . . . . . . . . . . . . . . . . . . DADGVYAALPFLIANTKQLMGFGETRD
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Template Sequence  LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTE
Template Known Secondary structure  TT
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SSSSTTTT





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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   280.........290.........300.........310.........320...... ...330.........340.........350......
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Query Sequence  EPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMP. . . GSRREVKNAREEGVEFKFNVQPLGIEVNGN
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Template Sequence  ALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK
Template Known Secondary structure  TS
SS

S

STT

SSSSS
TTS
T

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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   357..360.........370.........380.........390.........400........ .410.........420.........430.....
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Query Sequence  GKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEW. LAKHSVELDSQGRIIAPEGSDNAFQTS
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Template Sequence  GA. . . . . . . . . . . . . . . . . . . . . . RVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPV. . . . DEHLRTR
Template Known Secondary structure  ......................TTS
S
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TT

GGGGT



TTS



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   240. ........250.........260.........270.........280...... ...290...
 
   436...440.........450.........460........
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Query Sequence  NPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMN
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Template Sequence  VPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVR
Template Known Secondary structure  STT
GGGSSS


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   294.....300.........310.........320......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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