Job Description P09832 Confidence 99.96% Date Thu Jan 5 11:02:29 GMT 2012 Rank 50 Aligned Residues 293 % Identity 22% Template c1gv4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) Resolution 2.0 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.																												.	.	.	.
Predicted Secondary structure																																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	M	S	G	V	K	Q	T	G	K	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	.	.	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	F	G
Query Conservation																																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	Q	I	R	A	P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	D	D	P	N	V	T	K	T	L	Q	F	R	Q	W	N	G	K	E	R	S
Template Known Secondary structure																	S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G	S				T	T										T	T	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		I	P	A	F	K	L	E	K	E	V	M	T	R	R	R	E	I	F	T	G	M	G	I	E	F	K	L	N	T	E	V	G	.	.	.	.	.	.	.	R	D	V	Q	L	D	D	L	L	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.
Template Sequence		I	Y	F	Q	P	P	S	F	Y	V	S	A	Q	D	L	P	N	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	H	L	D	V	R	G	N	M	V	K	L	N	D	G	S	Q	I	T	F	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	.	.	.	.	.	.	.	.	R	A	G
Template Known Secondary structure		S	B	S	S		G	G	G		B		G	G	G	G	G	G	S	T	T								S								T	T	T	T					T	T	S																								.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270									.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.
Predicted Secondary structure																																																				.	.	.																	.	.	.	.	.
Query SS confidence																																																				.	.	.																	.	.	.	.	.
Query Sequence		P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G	K	R	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	S	V	R	Q	G	A	.	.	.	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	.	.	.	.	.	S	R	R	E	V	K
Query Conservation																																																				.	.	.																	.	.	.	.	.
Alig confidence																																																				.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		A	E	V	K	S	R	T	T	L	F	R	K	I	G	D	F	R	A	L	E	K	I	S	R	E	V	K	S	I	T	V	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	S	Q	A	S	G	I	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	Q	Y	L	S	N	W	T	M	E
Template Known Secondary structure						T	T						S												T	T		S								S																										S	S	S	S	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G	N	G	K	V	S	G	V	K	M	V	R	T	E	M	G	E	P	D	A	K	G	R	R	R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		K	V	K	R	E	G	V	K	V	M	P	N	A	I	V	Q	S	V	G	V	S	G	G	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	T	A	V	G	L	E	P	N	V	.	E	L	A	K	T	G	G
Template Known Secondary structure					T	T	T						S										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S						S													.	T					T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.																							.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410
		414	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.										.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure								.																													.	.	.	.	.	.	.	.	.
Query SS confidence								.																													.	.	.	.	.	.	.	.	.
Query Sequence		V	E	L	D	S	Q	.	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	T	S	N	P	K	I	F	A	G	G	D	I	V	R	.	.	.	.	.	.	.	.	.	G	S	D	L	V	V	T	A	I	A	E	G	R	K	A	A	D	G	I
Query Conservation								.																													.	.	.	.	.	.	.	.	.
Alig confidence								.						.	.	.	.								.												.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.								.
Template Sequence		L	E	I	D	S	D	F	G	G	F	R	V	.	.	.	.	N	A	E	L	Q	A	R	.	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M
Template Known Secondary structure				B		T	T	T		S				.	.	.	.		T	T	S				.	T	T					G	G	G						T	T	T
Template Predicted Secondary structure														.	.	.	.								.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.					.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions