Job Description P09832 Confidence 100.00% Date Thu Jan 5 11:02:29 GMT 2012 Rank 8 Aligned Residues 350 % Identity 20% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																		.	.											.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.											.	.	.	.	.	.	.	.	.
Query Sequence		P	N	W	L	K	L	A	N	E	G	R	I	F	E	A	A	E	L	S	H	Q	T	N	T	L	P	E	V	C	G	R	V	.	.	C	P	Q	D	R	L	C	E	G	S	.	.	.	.	.	.	.	.	.	C	T	L	N	D	E	F	G	A	V	T	I	G	N	I	E	R	Y	I	N	D	K	A	F	E	M	G
Query Conservation																																		.	.											.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.											.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	L	P	Q	K	V	E	Q	G	R	Y	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	V	C	I	G	C	N	V	C	I	S	R	W	E	I	G	G	P	P	M	I	C	T	Q	N	A	T	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	Y	R	R	G
Template Known Secondary structure		T	T							T	T		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	S	S	S					S	S		T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.																		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.														.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		W	R	P	D	M	S	G	V	K	Q	T	G	K	K	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	K	A	V	V	F	D	R	H	P	E	I	G	G	L	L	T	F	.	.	.	.	.	G	I	P	A	F	K	L	E	K	E	V	M	T	R	R	R	E	I	F	T	G	M
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence		W	H	P	E	K	F	R	Q	T	K	N	K	D	S	V	L	I	V	G	A	G	P	S	G	S	E	A	A	R	V	L	M	E	S	G	Y	T	V	H	L	T	D	T	A	E	K	I	G	G	H	L	N	Q	V	A	A	L	P	G	L	G	E	W	S	Y	H	R	D	Y	R	E	T	Q	I	T	K	L	L	K	K
Template Known Secondary structure			B	T	T	B					S	S										S													T	T								S	S	S	S	T	T	T	T					T	T	S	T	T		G	G	G	G																T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	F	K	L	N	T	E	V	G	R	D	V	Q	L	D	D	L	L	S	D	Y	D	A	V	F	L	G	V	G	T	Y	Q	S	M	R	G	G	L	E	N	E	D	A	D	G	V	Y	A	A	L	P	F	L	I	A	N	T	K	Q	L	M	G	F	G	E	T	R	D	E	P	F	V	S	M	E	G	K	R
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.
Template Sequence		N	K	E	S	Q	L	A	L	G	Q	K	P	M	T	A	D	D	V	L	Q	Y	G	A	D	K	V	I	I	A	T	G	A	R	W	N	T	D	G	T	N	C	.	.	.	.	.	.	.	L	T	H	D	P	I	P	G	A	D	A	S	L	P	D	Q	L	T	P	E	Q	V	M	D	G	K	K	K	I	G	K	R
Template Known Secondary structure			T	T						S											T	S			S												S	S				T	.	.	.	.	.	.	.	T	T	S	S			T	T			T	T	S	T	T										T		S				S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.								.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure								.	.																																			.	.	.	.
Query SS confidence								.	.																																			.	.	.	.
Query Sequence		V	V	V	L	G	G	.	.	G	D	T	A	M	D	C	V	R	T	S	V	R	Q	G	A	K	H	V	T	C	A	Y	R	R	D	E	E	N	M	P	G	S	R	.	.	.	.	R	E	V	K	N	A	R	E	E	G	V	E	F	K	F	N	V	Q	P	L	G	I	E	V	N	G	N	G	K	V	S	G	V	K
Query Conservation								.	.																																			.	.	.	.
Alig confidence								.	.																	.																		.	.	.	.																							.	.	.
Template Conservation																										.																																												.	.	.
Template Sequence		V	V	I	L	N	A	D	T	Y	F	M	A	P	S	L	A	E	K	L	A	T	A	G	H	.	E	V	T	I	V	S	G	V	H	L	A	N	Y	M	H	F	T	L	E	Y	P	N	M	M	R	R	L	H	E	L	H	V	E	E	L	G	D	H	F	C	S	R	I	.	.	.	E	P	G	R	M	E	I	Y	N
Template Known Secondary structure										S	S												T	T		.							S	S		T	T	T					T	T												T	T						S							.	.	.		T	T
Template Predicted Secondary structure																										.																																												.	.	.
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.		.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.				.	.	600	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	R	T	E	M	G	E	P	D	A	K	G	R	R	R	A	E	I	V	A	G	S	E	H	I	V	P	A	D	A	V	I	M	A	F	G	F	R	P	H	N	M	E	W	L	A	K	H	S	V	E	L	D	S	Q	G	R	I	I	A	P	E	G	S	D	N	A	F	Q	T	S	N	P	K	I	F	A	G	G
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	W	G	D	G	S	K	R	T	Y	R	G	P	G	V	S	P	R	D	A	N	T	S	H	R	W	I	E	F	D	S	L	V	L	V	T	G	R	H	S	E	C	T	L	W	N	E	L	K	A	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	W	A	E	N	D	I	K	G	I	Y	L	I	G
Template Known Secondary structure		T	T		S		S							T	T	S		S	S												S						S															T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	G	G	G	T								G
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.														.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	R	G	S	D	L	V	V	T	A	I	A	E	G	R	K	A	A	D	G	I	M	N	W	L
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		D	A	E	A	.	P	R	L	I	A	D	A	T	F	T	G	H	R	V	A	R	E	I	E	E	A	N
Template Known Secondary structure		G	G	T	S	.																	T	T	T	S	S
Template Predicted Secondary structure						.
Template SS confidence
		674	.	.	.		.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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