Return to main results Retrieve Phyre Job Id

Job DescriptionP76469
Confidence97.66%DateThu Jan 5 12:23:13 GMT 2012
Rank59Aligned Residues212
% Identity19%Templatec3qjaA_
PDB info PDB header:lyaseChain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
Resolution1.29 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20......... 30.........40.........50.........60.........70.........80
Predicted Secondary structure 












.



















Query SS confidence 



























.


















































Query Sequence  NALLSNPFKERLRKGEVQIGLWLSSTTA. YMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSK
Query Conservation       
 
   
  
    
       
.   
  
  
 
 
 

 

           
 
    
    


     
Alig confidence 












..












.























.

























Template Conservation             
 .. 
  
 
 
   
   
      

 






   
 .
    
  
     



 

 
   
Template Sequence  AAPPPLDVMAALR. . EPGIGVIAEVKDPAKLAQAYQDGGARIVSVVTEQRRFQ. GSLDDLDAVRASVSIPVLRKDFVVQP
Template Known Secondary structure  S




T..SSS


TT
S

GGG.
SS
S


S
Template Predicted Secondary structure 



..


















.












Template SS confidence 















































































   36...40........ .50.........60.........70.........80...... ...90.........100.........110..
 
   81........90..... ....100.........110.........120.........130.........140.........150.........
Predicted Secondary structure 



.































Query SS confidence 














.































































Query Sequence  PLIKQVLDIGAQTLL. IPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALD
Query Conservation    
   

 

 

 . 
 
   
 
   
 
 



 
 

                    

    
  



  

 
Alig confidence 














.

















.............................
















Template Conservation   

  
   


 



   
    
  
   
 ............................. 

   



    
  
Template Sequence  YQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . SLGMTALVEVHTEQEAD
Template Known Secondary structure  TT
SGGGS
.............................TT
SS
Template Predicted Secondary structure 







.............................






Template SS confidence 















































































   126...130.........140.........150......... 160.........170......
 
   160.........170.........180.........190.........200.........210........ .220.........230.......
Predicted Secondary structure 


















..





Query SS confidence 


























































. .


















Query Sequence  NLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV. . APDMAQQCLAWGANFVAVG
Query Conservation   
 

 
 



 
 

  


 


       
    
   
   
   
   
    ..           
       
Alig confidence 




....















......














....








..


















Template Conservation   
   ....

  
 


  
    ......        
      ....   


 


 
 


      







Template Sequence  RALKA. . . . GAKVIGVNARDLMTLD. . . . . . VDRDCFARIAPGLPS. . . . SVIRIAESGVRGTADLLAYAGAGADAVLVG
Template Known Secondary structure  ....T
SSB
TTT

......B
TTGGGS
T....TSS


STT
S
Template Predicted Secondary structure 
....










......



....











Template SS confidence 















































































   177..180. ........190....... ..200.........210.. .......220.........230.........240..
 
   238.240...... ...250.........260.
Predicted Secondary structure  .




Query SS confidence 








.














Query Sequence  VDTMLYSDA. LDQRLAMFKSGKNGP
Query Conservation   
   
  
.               
Alig confidence 
..





.














Template Conservation 
..

    

      
  
   
Template Sequence  E. . GLVTSGDPRAAVADLVTAGTHP
Template Known Secondary structure  ..T
S
TTTT
S
Template Predicted Secondary structure  ..






Template SS confidence 
























   243 ......250.........260.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions