Job Description P76469 Confidence 99.85% Date Thu Jan 5 12:23:13 GMT 2012 Rank 27 Aligned Residues 206 % Identity 17% Template c3pugA_ PDB info PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate Resolution 2.70 Å

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		22	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.																			.	.	.	70	.	.	.	.	.
Predicted Secondary structure								.	.	.	.												.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.												.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	W	L	S	S	T	.	.	.	.	T	A	Y	M	A	E	I	A	A	T	S	.	.	.	.	G	Y	D	W	L	L	I	D	G	E	H	A	P	N	T	I	Q	D	L	Y	H	Q	L	Q	A	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	S	Q	P	V	I	R	P
Query Conservation								.	.	.	.												.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.												.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	S	P	T	A	V	E	D	D	S	A	K	M	L	R	R	A	A	G	L	R	G	M	Q	A	P	D	V	W	V	P	D	N	E	D	A	T	A	P	S	M	R	D	E	G	A	E	N	I	V	E	V	I	S	E	Q	G	A	E	F	P	G	E	I	H	P	R	M	V	W	H	R	D	S	P	E	T	R	Y
Template Known Secondary structure						S						T	T							T	T			G	G	G	S		S						S	S	T	T	S		G	G	G																G	G	G			S					B					T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		V	E	G	S	K	P	L	I	K	Q	V	L	D	I	.	.	.	.	G	A	Q	T	L	L	I	P	M	V	D	T	A	E	Q	A	R	Q	V	V	S	A	T	R	Y	P	P	Y	G	E	R	G	V	G	A	S	V	A	R	A	A	R	W	G	R	I	E	N	Y	M	A	Q	V	N	D	S	L	C	L	L	V	Q
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	F	Q	H	M	L	D	I	T	D	P	E	R	G	A	V	E	H	I	H	G	F	V	I	P	E	V	G	G	I	D	D	W	K	K	A	D	E	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	V	E	H	E	H	G	L	D	E	G	S	L	A	M	S	V	I
Template Known Secondary structure											T		G	G	G	S		G	G	G								S			S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T			T	T		S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																.	.	.	.	.	.	.	.																												.																													.	.
Query SS confidence																.	.	.	.	.	.	.	.																												.																													.	.
Query Sequence		V	E	S	K	T	A	L	D	N	L	D	E	I	L	.	.	.	.	.	.	.	.	D	V	E	G	I	D	G	V	F	I	G	P	A	D	L	S	A	S	L	G	Y	P	D	N	A	G	H	.	P	E	V	Q	R	I	I	E	T	S	I	R	R	I	R	A	A	G	K	A	A	G	F	L	A	V	A	P	.	.
Query Conservation																.	.	.	.	.	.	.	.																												.																													.	.
Alig confidence																.	.	.	.	.	.	.	.																												.																													.	.
Template Conservation
Template Sequence		I	E	S	G	E	A	E	L	A	M	G	D	L	R	D	E	M	G	K	P	T	N	N	L	E	R	L	F	L	L	V	D	G	E	V	D	Y	T	K	D	M	R	A	M	T	P	T	G	E	L	P	A	W	P	E	L	R	H	N	T	S	R	G	A	S	A	A	G	C	V	A	V	D	G	P	Y	D	D	I	R
Template Known Secondary structure				S							G	G	G					T	T	S	T	T			G	G	G															T	T				S	S																					T											T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
								221	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.													.	.
Query SS confidence		.	.	.	.	.	.													.	.
Query Sequence		.	.	.	.	.	.	D	M	A	Q	Q	C	L	A	W	G	A	N	.	.	F	V	A	V	G	V	D	T	M	L	Y	S	D	A	L
Query Conservation		.	.	.	.	.	.													.	.
Alig confidence		.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		D	V	E	G	Y	R	E	R	M	T	D	N	Q	A	K	G	M	L	G	I	W	S	L	T	P	G	Q	V	V	E	A	N	T	S	P
Template Known Secondary structure															T	T	T							S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions