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Job DescriptionP76469
Confidence99.85%DateThu Jan 5 12:23:13 GMT 2012
Rank27Aligned Residues206
% Identity17%Templatec3pugA_
PDB info PDB header:transferaseChain: A: PDB Molecule:malate synthase; PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22..... ..30........ .40.........50.........60...... ...70.....
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Query Sequence  LWLSST. . . . TAYMAEIAATS. . . . GYDWLLIDGEHAPNTIQDLYHQLQAVAP. . . . . . . . . . . . . . . . . . YASQPVIRP
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Template Sequence  FTSPTAVEDDSAKMLRRAAGLRGMQAPDVWVPDNEDATAPSMRDEGAENIVEVISEQGAEFPGEIHPRMVWHRDSPETRY
Template Known Secondary structure  S




TTTT

GGGS
SSSTTS
GGGGGG

S

B



TT
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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   76...80......... 90.........100.........110.........120.........130.........140.........150.
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Query Sequence  VEGSKPLIKQVLDI. . . . GAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQ
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Template Sequence  QGFQHMLDITDPERGAVEHIHGFVIPEVGGIDDWKKADEFF. . . . . . . . . . . . . . . . . . . . TIVEHEHGLDEGSLAMSVI
Template Known Secondary structure  T
GGGS
GGG


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   97..100.........110.........120.........130....... ..140.........150......
 
   152.......160..... ....170.........180.........190.. .......200.........210.........220
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Query Sequence  VESKTALDNLDEIL. . . . . . . . DVEGIDGVFIGPADLSASLGYPDNAGH. PEVQRIIETSIRRIRAAGKAAGFLAVAP. .
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Template Sequence  IESGEAELAMGDLRDEMGKPTNNLERLFLLVDGEVDYTKDMRAMTPTGELPAWPELRHNTSRGASAAGCVAVDGPYDDIR
Template Known Secondary structure 
SGGGTTSTT

GGG
TT


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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   221........230.. .......240.......
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Query Sequence  . . . . . . DMAQQCLAWGAN. . FVAVGVDTMLYSDAL
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Template Sequence  DVEGYRERMTDNQAKGMLGIWSLTPGQVVEANTSP
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TTT

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   237..240.........250.........260.........270.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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