Job Description P76469 Confidence 31.44% Date Thu Jan 5 12:23:13 GMT 2012 Rank 385 Aligned Residues 165 % Identity 10% Template c3oo2B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Resolution 2.37 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	T	T	A	Y	M	A	E	I	A	A	T	S	G	Y	D	W	L	L	I	D	G	E	H	A	P	N	T	I	Q	D	L	Y	H	Q	L	Q	A	V	A	P	Y	A	S	Q	P	V	I	R	P	V	E	G	S	K	P	L	I	K	Q	V	L	D	I	G	A	Q	T	L	L	I	P	M	V	D	T	A	E	Q
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Sequence		G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	F	F	A	V	.	.	.	.	.	.	.	.	.	A	T	L	D	E	A	I	E	L	R	M	H	G	I	T	A	K	I	L	V	L	G	V	L	P	A	K	D	I	D	K	A	I	Q	H	R	.	.	.	.	V	A	L	T	V	P	S	K	Q	W
Template Known Secondary structure		T	T											T	T	T							.	.	.	.	.	.	.	.	.	S	S										T	T			S						S				G	G	G							T	T	.	.	.	.		B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.										.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.											.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	Q	V	V	S	A	T	R	Y	P	P	Y	G	E	R	G	V	G	A	S	V	A	R	A	A	R	W	G	R	I	E	N	Y	M	A	Q	V	N	D	S	L	C	L	L	V	Q	V	E	S	.	.	.	.	.	.	.	.	.	.	K	T	A	L	D	N	L	D	E	I	L	D	V	E	G	I	D	G	V	F
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	E	A	I	K	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	K	L	W	L	H	I	K	L	D	T	G	M	G	R	L	G	I	K	D	T	K	T	Y	Q	E	V	I	E	I	I	Q	Q	Y	E	Q	L	V	F	E	G
Template Known Secondary structure						T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										B			S	S		S	S	S	B																	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.																															.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	P	A	D	L	S	A	S	L	G	Y	P	D	N	A	G	H	P	E	V	Q	R	I	I	E	T	S	I	R	R	I	R	A	A	G	K	A	A	G	F	L	A	V	A	P	D	M	A	Q	Q	C	L	A	W	G	A	N	F	V	A	V	G	V
Query Conservation
Alig confidence						.	.	.	.	.								.
Template Conservation						.	.	.	.	.								.
Template Sequence		V	F	T	H	.	.	.	.	.	F	A	C	A	D	E	P	.	G	D	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	N	E	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	S	L	L	M	D	C	Q	F	C	N	A	I	R	P	G	I
Template Known Secondary structure						.	.	.	.	.		S		T	T	S		.	S	S														T	T	S				S																S	S								G
Template Predicted Secondary structure						.	.	.	.	.								.
Template SS confidence
		165	.	.	.						.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions