 |
Job Description | P76469 | Confidence | 48.29% | Date | Thu Jan 5 12:23:13 GMT 2012 |
Rank | 320 | Aligned Residues | 109 |
% Identity | 14% | Template | c3grcD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:sensor protein, kinase; |
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
|
Resolution | 2.21 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
. |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
Query Sequence |   |
N | A | L | L | S | N | P | F | K | E | R | L | R | K | G | E | V | Q | I | G | L | W | L | S | S | T | T | A | Y | M | A | E | I | A | A | T | S | G | Y | D | W | L | L | I | D | G | E | H | A | P | N | T | I | Q | D | L | Y | H | Q | L | Q | A | V | A | P | Y | A | S | Q | P | V | I | R | P | V | E | G | . |
. |
S |
Query Conservation |   |
  |   |   |   |   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |
|
|
|   |   |   | . | . |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   | . | . |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
Template Sequence |   |
D | P | D | I | A | R | L | L | N | L | X | L | E | K | G | G | F | D | . |
. |
S | D | X | V | H | S | A | A | Q | A | L | E | Q | V | A | R | R | P | Y | A | A | X | T | V | D | L | N | L | P | D | Q | D | G | V | S | L | I | R | A | L | R | R | D | S | R | T | R | D | L | A | I | V | V | V | S | A | N | A | R | E |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  | . | . |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |
| S | S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  | S | T | T | S | T | T |
|  |  |  |  |  |
| T | T |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
556 | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | |
|
. | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | P | L | I | K | Q | V | L | D | I | G | A | Q | T | L | L | I | P | M | V | D | T | A | E | Q | A | R | Q | V | V | S | A | T |
Query Conservation |   |
  |   |   |
|   |   |   |
|
|   |
|
|   |
|
|   |   |
|   |
|   |   |   |
|   |
|   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|
Template Sequence |   |
G | E | L | E | F | N | S | Q | P | L | A | V | S | T | W | L | E | K | P | I | D | E | N | L | L | I | L | S | L | H | R | A | I |
Template Known Secondary structure |   |
 |  |  |  | T | T | T |
| T | T | S | S | S |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
634 | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|