Job Description P76469 Confidence 96.86% Date Thu Jan 5 12:23:13 GMT 2012 Rank 82 Aligned Residues 208 % Identity 16% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.												.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.
Predicted Secondary structure										.																																		.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence										.																																		.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		P	F	K	E	R	L	R	K	.	G	E	V	Q	I	G	L	W	L	S	S	T	T	A	Y	M	A	E	I	A	A	T	S	G	Y	D	W	L	L	I	D	G	E	.	.	.	.	.	.	.	.	.	.	.	H	A	P	N	T	I	Q	D	L	Y	H	Q	L	Q	A	V	A	.	.	P	Y	A	S	Q	P	V	I
Query Conservation										.																																		.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence										.							.	.																										.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																	.	.
Template Sequence		S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	.	.	P	G	V	Y	D	G	L	S	A	R	V	A	L	S	A	G	F	D	A	L	Y	M	T	G	A	G	T	A	A	S	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	N	A	E	M	I	S	N	I	S	P	S	T	P	V	I	A
Template Known Secondary structure									S	T	T						.	.					S									T	T	T		S														T	S	S		S	S	S																		S	T	T	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		74	.	.	.	.							.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure							.	.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		R	P	V	E	G	.	.	.	.	.	.	S	K	P	L	I	K	Q	V	L	D	I	G	A	Q	T	L	L	I	.	.	.	.	.	.	P	M	V	D	T	A	E	Q	A	R	Q	V	V	S	A	T	R	Y	P	P	Y	G	E	R	G	V	G	A	S	V	A	R	A	A	R	W	G	R	I	E	N	Y	M	A	Q
Query Conservation							.	.	.	.	.	.																			.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																			.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	D	T	G	Y	G	G	P	I	M	V	A	R	T	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	A	R	Q	R
Template Known Secondary structure				T	T		S	S	S														T	T									B						B														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																								.	.	140	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		V	N	D	S	L	C	L	L	V	Q	V	E	S	.	.	.	.	.	.	K	T	A	L	D	N	L	D	E	I	L	D	V	E	G	I	D	G	V	F	I	G	P	A	D	L	S	A	S	L	G	Y	P	D	N	A	G	H	P	E	V	Q	R	I	I	E	T	S	I	R	R	I	R	A	A	G	K	A	A	G	F
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.														.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	S	D	I	V	V	I	A	R	T	D	S	L	Q	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	.	G	A	D	V	G	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	I	T	S	R	E	M	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L	N	M
Template Known Secondary structure			T																															.	T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T														T	T	T	S		B
Template Predicted Secondary structure																																		.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190																.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		216	.	.	.	220	.	.				.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																					.
Query SS confidence									.	.	.																					.
Query Sequence		L	A	V	A	P	D	M	.	.	.	A	Q	Q	C	L	A	W	G	A	N	F	V	A	V	G	V	D	T	M	L	.	Y	S	D	A	L	D	Q	R	L	A	M	F	K	S
Query Conservation									.	.	.																					.
Alig confidence									.	.	.																					.
Template Conservation
Template Sequence		V	E	H	G	A	T	P	S	I	S	A	A	E	A	K	E	M	G	F	R	I	I	I	F	P	F	A	A	L	G	P	A	V	A	A	M	R	E	A	M	E	K	L	K	R
Template Known Secondary structure			T	T	S	S	S												T		S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions