|   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
. | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
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|
|  |  |  |  |  |
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
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|
|  |  | . | . | . |  |  |
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|
|  |  |  |  |  |  |  |  |  |
|
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|
|  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
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| . |
. |
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| . |
. |
. |
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Query Sequence |   |
Y | M | A | E | I | A | A | T | S | G | Y | D | W | L | L | I | D | G | E | H | A | P | . |
. |
N | T | I | Q | D | L | Y | H | Q | L | Q | A | V | A | P | Y | A | S | Q | P | V | . |
. |
. |
I | R | P | V | E | G | S | K | P | L | I | K | Q | V | L | D | I | G | A | Q | T | L | L | I | P | M | V | D | T | A | E | Q |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |
|   |
|   |
|   |
|
|   |
|
|   |   | . | . |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   | . | . | . |
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|
|   |   |   |   |   |   |   |
|   |   |   |
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|   |
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|   |
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|   |   |
|   |
|   |   |   |
|   |
Alig confidence |   |
|
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| . |
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| . | . |
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| . | . | . |
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| . |
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Template Conservation |   |
  |   |
|   |   |   | . |   |   |
|   |
|   |
|
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|
|
|   |
|
|   |
|
|
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |
|   |   |   | . |
|   |   |   |   |   |
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|   |
|   |
|
|   |
|   |   |   |   |   |
Template Sequence |   |
E | Q | I | E | F | I | . |
D | S | H | A | D | Y | F | H | I | D | I | M | D | G | H | F | V | P | N | L | T | L | S | P | F | F | V | S | Q | V | K | K | L | A | T | K | P | L | D | C | H | L | M | V | T | R | P | Q | D | Y | . |
I | A | Q | L | A | R | A | G | A | D | F | I | T | L | H | P | E | T | I | N | G | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  | . |  | T | T |
| S |
|  |  |  |  |  |  |
| S | S | S | S | S |
|
|
| B |
|  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  |  |  |  | S | S |
| G | G | G | T | . |  |  |  |  |  |  |  | T |
| S |  |  |  |  |
| G | G | G |
| T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  | . |  |  |
|
|
|  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |
|
|  |  |  |  | . |  |  |  |  |  |  |
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|  |  |  |  |
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|  |  |
Template SS confidence |   |
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  |   |
17 | . | . | 20 | . | . | |
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
. | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . |
  |
  |   |
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
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|  |  |
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|  |  |  |  |  |  |  |
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|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
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|  |  |  |  |  |
|  |  |  |  |  |  |  |
Query SS confidence |   |
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Query Sequence |   |
A | R | Q | V | V | S | A | T | R | Y | P | P | Y | G | E | R | G | V | G | A | S | V | A | R | A | A | R | W | G | R | I | E | N | Y | M | A | Q | V | N | D | S | L | C | L | L | V | Q | V | E | S | K | T | A | L | D | N | L | D | E | I | L | D | V | E | G | I | D | G | V | F | I | G | P | A | D | L | S | A | S | L |
Query Conservation |   |
|   |   |   |
|   |
|   |
|
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
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|   |   |
|
|   |   |
|   |
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|   |
|   |
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|   |
|   |
|
|   |   |
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|
|   |
|
|
Alig confidence |   |
|
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|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
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|
| . | . |
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| . | . | . | . |
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|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |
|   | . | . |   |   |
|   |
|   |   | . | . | . | . |
|
|
|   |   |
Template Sequence |   |
A | F | R | L | I | D | E | I | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | H | D | M | K | V | G | L | I | L | N | P | E | T | P | V | E | A | M | K | Y | Y | I | H | . |
. |
K | A | D | K | I | T | V | . |
. |
. |
. |
M | T | V | D | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  | T | T |
|  |  |  |  |  |  |
| T | T |
|
| G | G | G | G | T | T | T | G | G | . | . | G |
| S |  |  |  |  | . | . | . | . |  | S | S |
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |  |
|
|  |  |  |  | . | . | . | . |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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  |   |
95 | . | . | . | . | 100 | . | . | . | |
|
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|
. | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | |
|
. | . | 130 | . | . | . | . | |
|
|
|
. | . | . | . | . |
  |
  |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | |
|
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
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|
|
|
|
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| . |
. |
. |
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|
Query Sequence |   |
G | Y | P | D | N | A | G | H | P | E | V | Q | R | I | I | E | T | S | I | R | R | I | R | A | A | G | K | A | A | G | F | L | . |
. |
. |
A | V | A | P | D | M | A | Q | Q | C | L | A | W | G | A | N | F | V | A | V | G | V |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
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|
|
|
|
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| . | . | . |
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|
|
Template Conservation |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
Template Sequence |   |
G | F | A | G | Q | P | F | I | P | E | M | L | D | K | L | A | E | L | K | A | W | R | E | R | E | G | L | E | Y | E | I | E | V | D | G | S | C | N | Q | A | T | Y | E | K | L | M | A | A | G | A | D | V | F | I | V | G | T |
Template Known Secondary structure |   |
T |
| S | S |
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  | S |
|
| S | T | T | T |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
| T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
  |   |
140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . |
  |