 |
Job Description | P76469 | Confidence | 47.32% | Date | Thu Jan 5 12:23:13 GMT 2012 |
Rank | 325 | Aligned Residues | 75 |
% Identity | 12% | Template | c3a24A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha-galactosidase; |
PDBTitle: crystal structure of bt1871 retaining glycosidase
|
Resolution | 2.30 Å |
|
 |
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | M | A | E | I | A | A | T | S | G | Y | D | W | L | L | I | D | G | E | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
A | P | N | T | I | Q | D | L | Y | H | Q | L | Q | A | V | A | P | Y | A | S | Q | P | V | I | R | P | V | E | G | S | K | P | . |
. |
. |
. |
. |
L | I | K | Q | V | L | D | I | G | A | Q | T | L | L |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |
|   |
|   |
|   |
|
|   |
|
| . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |
|
|
|   |   |   |   |   |   | . | . | . | . | . |   |
|   |   |   |
|
|   |
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|   |   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|
|   |   |
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
Template Sequence |   |
A | Y | I | D | F | A | S | A | N | G | I | E | Y | V | I | L | D | E | G | W | A | V | N | L | Q | A | D | L | M | Q | V | V | K | E | I | D | L | K | E | L | V | D | Y | A | A | S | K | N | V | G | I | I | L | W | A | G | Y | H | A | F | E | R | D | M | E | N | V | C | R | H | Y | A | E | M | G | V | K | G | F | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| T | T | S | B |
| T | T | S |
|
| T | T |
| B |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
334 | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . |
  |
  |   |
96 | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | P | M | V | D | T | A | E | Q |
Query Conservation |   |
  |
|   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|   |
|
Template Sequence |   |
V | D | F | M | D | R | D | D | Q |
Template Known Secondary structure |   |
 |  |
|
|
|
|
| S |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
414 | . | . | . | . | . | 420 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|