 |
Job Description | P76469 | Confidence | 88.92% | Date | Thu Jan 5 12:23:13 GMT 2012 |
Rank | 146 | Aligned Residues | 85 |
% Identity | 18% | Template | c2rduA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:hydroxyacid oxidase 1; |
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
|
Resolution | 1.65 Å |
|
 |
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | R | L | R | K | G | E | V | Q | I | G | L | W | L | S | S | T | T | A | Y | M | A | E | I | A | A | T | S | G | Y | D | W | L | L | I | D | . |
. |
. |
. |
. |
. |
G | E | H | A | P | N | T | I | Q | D | L | Y | H | Q | L | Q | A | V | A | P | Y | A | S | Q | P | V | I | R | P | V | E | G | S | K | P | L | I | K |
Query Conservation |   |
  |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
|   |
|
| . | . | . | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |
|
|   |   |
|   |   |   |
|   |
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   | . |   |
|   |
|
|   |   |
|
|
|
|   |
|   |
|
|   |
Template Sequence |   |
K | W | L | R | R | L | T | S | L | P | I | V | A | K | G | I | L | R | G | D | D | A | R | E | A | V | K | H | G | L | N | G | I | L | V | S | N | H | G | A | R | Q | L | D | G | V | P | A | T | I | D | V | L | P | E | I | V | E | A | V | E | G | . |
K | V | E | V | F | L | D | G | G | V | R | K | G | T | D | V | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| S |
|  |  |  |  |  |  |
| S |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
|
| G | G | G | T | S | S | T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | S | S |  |  |  |  |  | S | S |
|
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
223 | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | |
. | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | L | D | I | G | A | Q | T | L | L | I |
Query Conservation |   |
  |   |
|
|   |
|
|   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|   |
|
|   |
|
Template Sequence |   |
K | A | L | A | L | G | A | K | A | V | F | V |
Template Known Secondary structure |   |
 |  |  |  | T | T |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
302 | . | . | . | . | . | . | . | 310 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|