Job Description P76469 Confidence 59.52% Date Thu Jan 5 12:23:13 GMT 2012 Rank 273 Aligned Residues 181 % Identity 13% Template c1w8gA_ PDB info PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs Resolution 2.0 Å

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		53	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																																																	.	.	.	.	.								.	.
Query SS confidence														.	.	.	.	.	.																																																	.	.	.	.	.								.	.
Query Sequence		T	I	Q	D	L	Y	H	Q	L	Q	A	V	.	.	.	.	.	.	A	P	Y	A	S	Q	P	V	I	R	P	V	E	G	S	K	P	L	I	K	Q	V	L	D	I	G	A	Q	T	L	L	I	P	M	V	D	T	A	E	Q	A	R	Q	V	V	S	A	T	.	.	.	.	.	R	Y	P	P	Y	G	E	.	.
Query Conservation														.	.	.	.	.	.																																																	.	.	.	.	.								.	.
Alig confidence														.	.	.	.	.	.																																																	.	.	.	.	.								.	.
Template Conservation
Template Sequence		N	L	A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	E	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F	I	G	P	L	Q
Template Known Secondary structure																	T	T			G	G	G								T	T	S											T	T							S	S														T	T			S							S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
												120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.												.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	G	V	G	A	S	V	A	R	A	A	R	W	G	R	I	E	N	Y	M	A	Q	V	N	D	S	L	C	L	L	V	Q	V	E	S	K	.	.	.	.	.	.	.	.	.	.	.	T	A	L	D	N	L	D	E	I	L	D	V	E	G	I	D	G	V	F	I	G	P	A
Query Conservation		.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	K	S	R	L	V	A	E	H	F	D	W	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	A	E	L	P	P	L	N	V	L	I	Q	I	N	I	S	D	E	N	S	K	S	G	I	Q	L	A	E	L	D	E	L	A	A	A	V	A	E	L	P	R	L	R	L	R	G	L	M	A	I
Template Known Secondary structure		G	G	G									S							S											S		T	T	S												S		T	T				S	B		G	G	G										T		T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																								.
Query SS confidence																	.																								.
Query Sequence		D	L	S	A	S	L	G	Y	P	D	N	A	G	H	P	.	E	V	Q	R	I	I	E	T	S	I	R	R	I	R	A	A	G	K	A	A	G	F	L	.	A	V	A	P	D	M	A	Q	Q	C	L	A	W	G	A	N	F	V	A	V	G	V
Query Conservation																	.																								.
Alig confidence		.	.	.	.	.											.																								.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	P	A	P	E	S	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M	S	D	D	M	E	A	A	I	A	A	G	S	T	M	V	R	I	G	T
Template Known Secondary structure		.	.	.	.	.																												S	T	T									G	G	G								T		S					S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions