Job Description P76469 Confidence 99.89% Date Thu Jan 5 12:23:13 GMT 2012 Rank 19 Aligned Residues 228 % Identity 18% Template c1h6zA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei Resolution 3.00 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																						.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	K	E	R	L	R	K	G	E	V	Q	I	G	L	W	L	S	S	T	T	A	Y	M	A	E	I	A	A	T	S	G	Y	D	W	L	.	L	I	D	G	E	H	A	P	N	T	I	Q	D	L	Y	H	Q	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																								.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence		T	I	L	Q	W	C	Q	E	M	K	R	L	.	G	V	R	T	N	A	D	T	P	A	D	A	A	K	A	R	S	F	G	A	E	G	V	G	L	C	R	T	E	H	M	F	F	E	G	S	R	I	N	F	I	R	E	M	I	L	A	D	S	A	S	G	R	K	A	A	L	D	K	L	L	P	I	Q	R	A	D
Template Known Secondary structure													S	.							S	S									T	T	T			S					B		S	G	G	G	S	T	T	T										S		S	S
Template Predicted Secondary structure														.
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
						63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																															.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure		.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	A	V	A	P	Y	A	S	Q	P	V	I	R	P	V	E	G	S	K	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	Q	V	L	D	I	G	A	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	G	I	L	R	A	M	R	G	L	P	V	T	I	R	L	L	D	P	P	L	H	E	F	V	P	H	D	A	A	A	Q	F	E	L	A	Q	K	L	G	M	P	A	E	K	V	R	N	R	V	N	A	L	H	E	L	N	P	M	L	G	H	R	G	C	R	L	G	I	T	Y	P	E	I	Y	N	M	Q	V
Template Known Secondary structure							T	T	T	S	S	S									S		G	G	G	G			S	S		S	S	T	T	T	T	S		S	S	S												S	S			S	S	S	T	T	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
																						94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	I	P	M	V	D	T	A	E	Q	A	R	Q	V	V	S	A	T	R	Y	P	P	Y	G	E	R	G	V	G	A	S	V	A	R	A	A	R	W	G	R	I	E	N	Y	M	A	Q	V	.	.	.	N	D	S	L	C	L	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	I	I	E	A	A	I	A	V	S	E	E	G	S	S	V	I	P	E	I	M	V	P	L	V	G	K	K	E	E	L	S	L	I	R	E	E	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	A	E	A	V	I	T	K	S	G	K	R	V	H	Y	T	V	G	T
Template Known Secondary structure													T	T	T														S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S		S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.																					.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																								.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	V	E	S	K	T	A	L	D	N	L	D	E	I	L	D	V	E	G	I	D	G	V	F	I	G	P	A	D	L	S	A	S	L	G	Y	P	D	N	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	E	V	Q	R	I	I	E	T	S	I	R	R	I	R
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		M	I	E	V	P	R	A	A	V	T	A	D	S	I	A	Q	.	.	K	A	D	F	F	S	F	G	T	N	D	L	T	Q	M	G	C	G	F	S	R	D	D	A	G	P	F	L	R	H	Y	G	N	L	G	I	Y	A	Q	D	P	F	Q	S	I	D	Q	E	G	I	G	E	L	V	R	I	A	V	T	K	G	R
Template Known Secondary structure					S						T					T	T	.	.	T		S						T	T								T			G	G	G						T	T	T	T	T	T		S	S	S	S		T	T	T	S			T	T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.			.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.
		208	.	210			.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.							.	.	.
Query SS confidence					.	.							.	.	.
Query Sequence		A	A	G	.	.	K	A	A	G	F	L	.	.	.	A	V	A	P	D	M	A	Q	Q	C	L	A	W	G	A	N	F	V	A	V	G	V	D	T	M	L	Y	S	D	A	L	D	Q	R	L	A	M	F	K	S	G	K	N
Query Conservation					.	.							.	.	.
Alig confidence					.	.							.	.	.																														.
Template Conservation																																													.
Template Sequence		R	V	K	P	M	L	K	M	G	I	C	G	E	H	G	G	D	P	A	T	I	G	F	C	H	K	V	G	L	D	Y	V	S	C	S	P	F	R	V	P	V	A	I	.	V	A	A	A	H	A	S	I	K	D	R	R	A
Template Known Secondary structure				S	T	T							S	G	G	G	G												T		S						G	G	G						.
Template Predicted Secondary structure																																													.
Template SS confidence
		845	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.		.	.	890	.	.	.	.	.	.	.	.	.	900

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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