Job Description P0A8W2 Confidence 88.87% Date Thu Jan 5 11:08:50 GMT 2012 Rank 294 Aligned Residues 73 % Identity 18% Template d1bjaa_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Transcription factor MotA, activation domain Resolution 2.19

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	T	Q	T	H	W	V	T	L	H	N	I	H	Q	L	P	P	D	Q	S	Q	I	Q	L	A	K	A	I	G	I	E	Q	P	S	L	V	.	R	T	L	D	Q	L	E	E	K	G	L	I	S	R	Q	T	C	A	S	D	R	R	A	K	R	I	K	L	T	E	K	A	E	P	L	I	S	E	M	E	A	V	I
Query Conservation																																						.
Alig confidence																.																						.																		.	.	.	.	.	.	.
Template Conservation																.																																								.	.	.	.	.	.	.
Template Sequence		L	N	E	K	T	A	T	I	L	I	T	I	A	K	.	K	D	F	I	T	A	A	E	V	R	E	V	H	P	D	L	G	N	A	V	V	N	S	N	I	G	V	L	I	K	K	G	L	V	E	K	S	G	D	.	.	.	.	.	.	.	G	L	I	I	T	G	E	A	Q	D	I	I	S	N	A	A	T	L	Y
Template Known Secondary structure		S														.	S	T	T	B								T		T	T	S														T	T	T	S					T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																.																																								.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		108	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		87	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions