Job Description P0A8W2 Confidence 81.44% Date Thu Jan 5 11:08:50 GMT 2012 Rank 348 Aligned Residues 91 % Identity 20% Template c2o59B_ PDB info PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 Resolution 2.50 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.																					.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.																																												.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.																																												.
Query Sequence		P	P	D	Q	S	Q	I	Q	L	A	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	.	E	Q	P	S	L	V	R	T	L	D	Q	L	E	E	K	G	L	I	S	R	Q	T	C	A	S	D	R	R	A	K	R	I	K	L	T	E	K	A	E	P	L	I	S	.
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.																																												.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.																						.	.	.	.	.	.	.																.
Template Conservation																																																											.	.	.	.	.	.	.
Template Sequence		P	R	H	F	T	D	A	T	L	L	S	A	M	T	G	I	A	R	F	V	Q	D	K	D	L	K	K	I	L	R	A	T	D	G	L	G	T	E	A	T	R	A	G	I	I	E	L	L	F	K	R	G	F	L	T	K	K	.	.	.	.	.	.	.	G	R	Y	I	H	S	T	D	A	G	K	A	L	F	H	S
Template Known Secondary structure																T	G	G	G	G													T	T	S	S	S		T	T	T											T	T	S				S	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.								.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
										102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	E	M	E	A	V	I	N	K	T	R	A	E	I	L	H	G	I	S	A	E	E	L	E	Q	L	I	T	L	I	A	K	L	E	H	N	I	I	E	L	Q	A
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																	.
Template Conservation																										.
Template Sequence		L	P	E	M	A	T	R	P	D	M	T	A	H	W	E	S	V	L	T	Q	I	S	E	K	.	Q	C	R	Y	Q	D	F	M	Q	P	L	V	G	T	L	Y	Q	L	I	D	Q	A	K	R
Template Known Secondary structure		S						S	S															T	T	.	S	S																						T
Template Predicted Secondary structure																										.
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions