Job Description P0A8W2 Confidence 79.80% Date Thu Jan 5 11:08:50 GMT 2012 Rank 353 Aligned Residues 63 % Identity 13% Template c2gajA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form Resolution 1.95 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	P	S	L	V	R	T	L	D	Q	L	E	E	K	G	L	I	S	R	Q	T	C	A	S	D	R	R	A	K	R	I	K	L	T	E	K	A	E	P	L	I	S	E	M	E	A	V	I	N	K	T	R	A	E	I	L	H	G	I	S	A	E	E	L	E	Q	L	I	T	L	I	A	K	L	E	H
Query Conservation
Alig confidence																									.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Sequence		R	P	S	T	Y	A	S	T	I	K	L	L	L	N	R	G	Y	I	K	K	I	R	G	.	.	.	.	.	.	.	Y	L	Y	P	T	I	V	G	S	V	V	M	D	Y	L	E	K	K	Y	S	D	V	.	.	.	.	.	.	.	V	S	V	S	F	T	A	E	M	E	K	D	L	D	E	V	E	Q
Template Known Secondary structure			T	T	T											T	T	S					T	T	.	.	.	.	.	.	.					B														S	T	T	T	.	.	.	.	.	.	.	T	S																T
Template Predicted Secondary structure																									.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.								.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions