Job Description P76135 Confidence 100.00% Date Thu Jan 5 12:19:26 GMT 2012 Rank 1 Aligned Residues 224 % Identity 16% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		V	I	F	I	H	H	A	F	N	A	N	I	L	D	.	.	K	D	Y	A	F	S	D	G	E	I	L	M	V	D	N	A	V	R	T	H	F	E	P	Y	E	R	H	F	K	E	I	G	F	T	E	N	T	I	K	K	Y	L	Q	C	T	N	I	Q	T	V	T	V	P	V	P	A	K	F	L	R	A	S	N	V
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	K	S	Y	I	L	G	N	K	D	L	L	L	W	N	C	E	H	N
Template Known Secondary structure					S	S	S							T	T	T	T							T	T							T	T												S	S																																		S	S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	G	L	L	N	E	M	I	A	Y	L	N	S	E	E	R	N	H	H	N	F	S	E	L	L	L	F	S	C	L	S	I	F	A	A	C	K	G	F	I	T	L	L	T	N	G	V	L	S	V	S	G	K	V	R	N	I	V	N	M	K	P	A	H	P	W	K	L	K	D	I	C	D	C	L	Y	I	S	E
Query Conservation
Alig confidence																																			.	.	.
Template Conservation																																			.	.	.
Template Sequence		D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	.	.	.	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L	V	K	S	D	I	T	R	N	W	R	W	A	D	I	C	G	E	L	R	T	N	R
Template Known Secondary structure											T	T	T	S	S																				.	.	.	T	T	T	S	S	S		S	S			T	T													T	T	T	S												T
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		S	L	L	K	K	K	L	K	Q	E	Q	T	T	F	S	Q	I	L	L	D	A	R	M	Q	H	A	K	N	L	I	.	R	V	E	G	S	V	N	K	I	A	E	Q	C	G	Y	A	S	T	S	Y	F	I	Y	A	F	R	K	H	F	G	N	S	P	K	R	V	S	K	E
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		M	I	L	K	K	E	L	E	S	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T	M	N	V	A	P	S	E	Y	L	F	M
Template Known Secondary structure										T	T	T																						T											T	T		S														S	S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions