Job Description P75804 Confidence 99.59% Date Thu Jan 5 12:14:23 GMT 2012 Rank 31 Aligned Residues 331 % Identity 9% Template d1nira2 SCOP info 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Resolution 2.15

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	A	A	P	A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S
Query Conservation
Alig confidence																		.																																										.	.	.	.	.
Template Conservation																		.																																										.	.	.	.	.
Template Sequence		L	V	D	G	D	S	K	K	I	V	K	V	I	D	T	G	.	Y	A	V	H	I	S	R	M	S	A	S	G	R	Y	L	L	V	I	G	R	D	A	R	I	D	M	I	D	L	W	A	K	E	P	T	K	V	A	E	I	K	.	.	.	.	.	I	G	I	E	A	R	S	V	E	S	S	K	F	K	G	Y	E
Template Known Secondary structure					T	T	T										S	.	T	T								T	T	S								T	T	S							T	T	S	S	S									.	.	.	.	.			S										S	T	T		T
Template Predicted Secondary structure																		.																																										.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		98		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		R	.	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L
Query Conservation			.
Alig confidence			.																																											.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence		D	R	Y	T	I	A	G	A	Y	W	P	P	Q	F	A	I	M	D	G	E	T	L	E	P	K	Q	I	V	S	T	R	G	M	T	V	D	T	Q	T	Y	H	P	E	P	.	.	.	.	.	.	.	R	V	A	A	I	I	A	S	H	E	H	P	E	F	I	V	N	V	K	E	T	G	K	V	L	L	V	N	Y
Template Known Secondary structure		T	T									S	S							T	T	T														S	S	S					S			.	.	.	.	.	.	.									S	S	S	S							T	T	T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280								.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	.	.	.	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P
Query Conservation																																																										.	.	.
Alig confidence																									.	.	.																															.	.	.
Template Conservation																									.	.	.
Template Sequence		K	D	I	D	N	L	T	V	T	S	I	G	A	A	P	F	L	H	D	G	G	W	D	.	.	.	S	S	H	R	Y	F	M	T	A	A	N	N	S	N	K	V	A	V	I	D	S	K	D	R	R	L	S	A	L	V	D	V	G	K	T	P	H	P	G	R	G	A	N	F	V	H	P	K	Y	G	P	V	W	S
Template Known Secondary structure		T	T	S	S	S										S	S								.	.	.	T	T	S								G	G	G	T							T	T	T	T									S	S	S	B			T	T							T	T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.
Query Sequence		L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	.	.	.	.	.	.	.	K	D	V	I	V	M	S	V	N	G	D
Query Conservation																																																																.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		T	S	H	L	G	D	G	S	I	S	L	I	G	T	D	P	K	N	H	P	Q	Y	A	W	K	K	V	A	E	L	Q	G	Q	G	G	G	S	L	F	I	K	T	.	.	.	.	.	.	.	H	P	K	S	S	H	L	Y	V	D	T	T	F	N	P	D	A	R	I	S	Q	S	V	A	V	F	D	L	K	N	L
Template Known Secondary structure				B	S	S	S	S									T	T	T		T	T	T	B	T	S								S		S								.	.	.	.	.	.	.		T	T									T	T		S	S					T							T	T		T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.								.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		327	.	.	330	.	.							.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure								.	.	.	.	.	.																										.	.	.	.
Query SS confidence								.	.	.	.	.	.																										.	.	.	.
Query Sequence		K	V	T	E	D	G	.	.	.	.	.	.	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	.	.	.	.	D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation								.	.	.	.	.	.																										.	.	.	.
Alig confidence								.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		D	A	K	Y	Q	V	L	P	I	A	E	W	A	D	L	G	E	G	A	K	R	V	V	Q	P	E	Y	N	K	R	G	D	E	V	W	F	S	V	W	N	G	K	N	D	S	S	A	L	V	V	V	D	D	K	T
Template Known Secondary structure		T	S															S	S											S	S	S	S										T	T	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions