Job Description P75804 Confidence 99.07% Date Thu Jan 5 12:14:23 GMT 2012 Rank 107 Aligned Residues 314 % Identity 10% Template c3s8vA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-dkk1 complex Resolution 3.10 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.
Predicted Secondary structure																										.																																																		.
Query SS confidence																										.																																																		.
Query Sequence		T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	.	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	.	S	R	R	I	W
Query Conservation																										.																																																		.
Alig confidence																										.																													.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	N	V	A	I	P	L	T	G	V	K	E	A	S	A	L	D	F	D	V	T	D	N	R	I	Y	W	T	D	I	S	L	K	T	I	S	R	A	F	M	N	G	S	A	L	E	H	V	V	E	F	G	.	.	.	.	.	.	.	.	.	.	L	D	Y	P	E	G	M	A	V	D	W	L	G	K	N	L	Y
Template Known Secondary structure										S	S		S	S								T	T	T	T							T	T	T	T							T	T	S		S							S	S	.	.	.	.	.	.	.	.	.	.		S									T	T	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.											.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	D	T	G	T	N	R	I	E	V	S	K	L	D	G	Q	H	R	Q	V	L	V	W	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	S	P	R	A	L	A	L	D	P	A	E	G	F	M	Y	W	T	E	W	G	G	K	P	K	I	D	R	A	A	M	D	G	S	E
Template Known Secondary structure					T	T	T	T							T	T	S		S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T	T								S	S	S								T	T	S		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.																			.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.																			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.									.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		K	L	V	R	L	T	D	Q	G	E	I	P	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	.	.	.	.	.	.	.	.	W	S	N	A	L	W	L	N	E	H	G	P
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	T	L	V	P	N	V	G	R	A	N	G	L	T	I	D	Y	A	K	R	R	L	Y	W	T	D	L	D	T	N	L	I	E	S	S	N	M	L	G	L	N	R	E	V	I	A	D	D	L	P	H	P	F	G	L	T	Q	Y	Q	D	Y	I	Y	W	T	D	W	S	R	R	S	I	E	R	A	N	K	T	S
Template Known Secondary structure								S		S		B							T	T	T	T							T	T	T	T							T	T	S		S									S	S								S	S							T	T	T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		783	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D
Query Conservation
Alig confidence																																																																				.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		G	Q	N	R	T	I	I	Q	G	H	L	D	Y	V	M	D	I	L	V	F	H	S	S	R	Q	S	G	W	N	E	C	A	S	S	N	G	H	C	S	H	L	C	L	A	V	P	G	F	V	C	G	C	P	A	H	Y	S	L	N	A	D	N	R	T	C	S	.	.	.	A	P	T	T	F	L	L	F	S	Q	K
Template Known Secondary structure		S		S							S		S										T	T	T	S					G	G	G	T	G	G	G	G		S	S														T	T					T	T	S	S				.	.	.			S	S							S
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		863	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.				.	930	.	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		S	A	I	N	R	M	V	I	D	E	Q	P	D	I	.	.	.	I	L	P	I	H	S	L	R	N	V	R	A	I	D	Y	D	P	L	D	K	Q	L	Y	W	I	D	S	R	Q	N	M	I	R	K	A	Q	E	D	G
Template Known Secondary structure		S														.	.	.								S									T	T	T	T								T	T	T							T	T	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		942	.	.	.	.	.	.	.	950	.	.	.	.	.				.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions