Phyre 2 alignment of P75804 with c3ow8A

Job Description P75804
Confidence 99.17% Date Thu Jan 5 12:14:23 GMT 2012

Rank 94 Aligned Residues 282

% Identity 15% Template c3ow8A_

PDB info PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 61; PDBTitle: crystal structure of the wd repeat-containing protein 61

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S
Query Conservation
Alig confidence																				.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																				.	.	.																												.	.	.	.	.	.	.	.
Template Sequence	G	I	L	F	K	Q	E	Q	A	H	D	D	A	I	W	S	V	A	W	.	.	.	G	E	T	V	V	T	G	S	L	D	D	L	V	K	V	W	K	W	R	D	E	R	L	D	L	Q	W	.	.	.	.	.	.	.	.	S	L	E	G	H	Q	L	G	V	V	S	V	D	I	S	H	T	L	P	I	A	A	S
Template Known Secondary structure							T	T	S	S	S	S								.	.	.									T	T	S									T	T							.	.	.	.	.	.	.	.						S	S									S	S	S	S
Template Predicted Secondary structure																				.	.	.																												.	.	.	.	.	.	.	.
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Sequence	S	S	L	D	A	H	I	R	L	W	D	L	E	N	G	K	Q	I	K	S	I	D	A	G	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	W	T	L	A	F	S	P	D	S	Q	Y	L	A	T	G	T	H	V	G	K	V	N	I	F	G	V	E	S	.	.	.	.	.	.
Template Known Secondary structure			T	T	S							T	T	T	T										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S	S							T	T	S							T	T	T	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	K	E	Y	S	L	D	T	R	G	K	F	I	L	S	I	A	Y	S	P	D	G	K	Y	L	A	S	G	.	.	A	I	D	G	I	I	N	I	F	D	I	A	T	G	K	L	L	H	T	L	E	G	H	A	M	P	I	R	S	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								S	S	S									T	T	S	S						.	.		T	T	S							T	T	T	T										S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
																				138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	.	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R
Query Conservation																																								.	.	.	.	.
Alig confidence																																								.	.	.	.	.																												.	.	.
Template Conservation																																																																								.	.	.
Template Sequence	T	F	S	P	D	S	Q	L	L	V	T	A	S	D	D	G	Y	I	K	I	Y	D	V	Q	H	A	N	L	A	G	T	L	S	G	H	A	S	W	V	L	N	V	A	F	C	P	D	D	T	H	F	V	S	S	S	S	D	K	S	V	K	V	W	D	V	G	T	R	T	C	V	.	.	.	H	T	F	F	D	H
Template Known Secondary structure				T	T	S								T	T	S							T	T	T											S	S									T	T	S	S							T	T	S							T	T	T	T				.	.	.
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence	Q	D	Q	V	W	G	V	K	Y	N	G	N	G	S	.	K	I	V	S	V	G	D	D	Q	E	I	H
Template Known Secondary structure	S	S									T	T	S	S	.							T	T
Template Predicted Secondary structure															.
Template SS confidence
	274	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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