Job Description P75804 Confidence 95.38% Date Thu Jan 5 12:14:23 GMT 2012 Rank 158 Aligned Residues 310 % Identity 11% Template c3ottB_ PDB info PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron Resolution 2.30 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V
Query Conservation
Alig confidence																	.	.																		.	.	.
Template Conservation																	.	.																		.	.	.
Template Sequence		K	S	L	A	L	D	G	N	G	D	L	L	A	G	T	.	.	D	N	G	L	Y	V	Y	H	N	D	T	T	P	L	Q	H	I	.	.	.	I	H	D	S	R	N	I	Q	S	L	T	N	N	I	I	W	N	I	F	A	D	Q	E	H	N	I	W	L	G	T	D	Y	G	I	S	L	S	R	Y	N	S	L	Q
Template Known Secondary structure								T	T	S							.	.	T	T								T	T	S						.	.	.				T	T		T	T	S		S		S									T	T								S	S	S
Template Predicted Secondary structure																	.	.																		.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	Q	I	T	G	T	G	D	G	N	Q	F	Y	S	L	F	R	D	S	K	G	F	Y	W	F	G	G	A	N	G	L	I	R	F	T	D	P	A	G	E	R	H	D	A	I	W	Y	R	M	G	D	K	T	Y	P	L	S	H	N	R
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					S	S					B								T	T	S							T	T						S		T	T			S								T	T		S	S	S			S		S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		338	.	340																	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	H	I	Y	E	D	K	E	Q	Q	L	W	I	A	T	D	G	S	I	N	R	Y	D	Y	A	T	R	Q	F	I	H	Y	N	I	V	D	N	T	G	T	Y	N	T	N	W	T	Y	Y	I	F	E	D	T	A	G	Q	L	W	I	S	T	C	L	G	G	I	F	V	V	D	K	H	K	L	M	Q	S	T	S
Template Known Secondary structure									T	T	S							T	T							T	T	T	T										T	T	S			B		S	S								T	T	S							S	S	S															S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	Y	I	A	E	Q	N	Y	S	V	H	N	G	L	S	G	M	F	I	N	Q	I	I	P	D	N	E	G	N	V	W	V	L	L	Y	N	N	K	G	I	D	K	I	N	P	R	T	R	E	V	T	K	L	F	A	D	E	L	T	G	E	K	S	P	N	Y	L	L	C	D	E	D	G	L	L	W	V	G	F
Template Known Secondary structure		S	S				S					T	T	T	T		S		S									S	S	S							T	T		S	S						T	T	T	T						S	T	T	T	S	S	G	G	G									T	T	S
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		H	G	G	.	.	.	V	M	R	I	N	P	K	D
Template Known Secondary structure		T	T		.	.	.						T	T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		562	.	.				.	.	.	.	.	570	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions