Job Description P75804 Confidence 98.85% Date Thu Jan 5 12:14:23 GMT 2012 Rank 127 Aligned Residues 289 % Identity 9% Template c3odtB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 Resolution 1.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		T	V	N	V	.	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L
Query Conservation						.
Alig confidence						.																	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	Q	L	S	A	T	L	K	G	H	D	Q	D	V	R	D	V	V	A	V	.	D	D	S	K	V	A	S	V	S	R	D	G	T	V	R	L	W	S	K	D	D	Q	W	L	G	T	V	V	Y	.	.	.	.	.	.	.	.	.	.	T	G	Q	G	F	L	N	S	V	C	Y	D	S	E	K	E	L	L	L
Template Known Secondary structure													S	S									.		T	T							T	T	S								S	S	S								.	.	.	.	.	.	.	.	.	.			S	S									T	T	T	T
Template Predicted Secondary structure																							.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		F	G	G	K	D	T	X	I	.	.	.	.	.	.	.	.	N	G	V	P	L	F	A	T	S	G	E	D	P	L	Y	T	L	I	G	H	Q	G	N	V	C	S	L	S	F	Q	D	G	V	V	I	S	G	S	W	D	K	T	A	K	V	W	K	E	G	S	L	V	Y	N	L	Q	A	H	N	A	S	V	W	D
Template Known Secondary structure					T	T	S			.	.	.	.	.	.	.	.					T	T			T	T	S			S							S	S									T	T							T	T	S							T	T										S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.									.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		A	K	V	V	S	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	K	F	L	T	A	S	A	D	K	T	I	K	L	W	.	.	Q	N	D	K	V	I	K	T	F	S	G	I	H	N	D	V	V	R	H	L	A	V	V	D	D	G	H	F	I
Template Known Secondary structure							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T	S						.	.		T	T								S	S		S	S										T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		143	.	.	.	.	.	.																											150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.																										.	.	.
Template Conservation																																					.	.	.	.	.	.	.																										.	.	.
Template Sequence		S	C	S	N	D	G	L	I	K	L	V	D	X	H	T	G	D	V	L	R	T	Y	E	G	H	E	S	F	V	Y	C	I	K	L	L	.	.	.	.	.	.	.	P	N	G	D	I	V	S	C	G	E	D	R	T	V	R	I	W	S	K	E	N	G	S	L	K	.	.	.	Q	V	I	T	L	P	A	I	S	I
Template Known Secondary structure					T	T	S							T	T	T											S	S									.	.	.	.	.	.	.	T	T	S							T	T	S							T	T	T		S			.	.	.						S	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	S	V	D	C	X	S	N	G	D	I	I	V	G	S	S	D	N	L	V	R	I	F	S	Q	E	K
Template Known Secondary structure								T	T	S							T	T	S							S		G
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions