Job Description P75804 Confidence 99.32% Date Thu Jan 5 12:14:23 GMT 2012 Rank 78 Aligned Residues 289 % Identity 12% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	T	F	S	N	R	S	D	R	V	K	G	I	D	F	H	P	T	E	P	W	V	L	T	T	L	Y	S	G	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	.	.	.	.	.	.	.	.	.	.	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	I	V	G	S	D
Template Known Secondary structure										S									S	S	S	S							T	T	S							T	T	T	T								.	.	.	.	.	.	.	.	.	.			S	S									G	G	G	T							T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Sequence		D	F	R	I	R	V	F	N	Y	N	T	G	E	K	V	V	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	H	P	D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	S	G	S	D	D	L	T	V	K	L	W	N	W	E	N	N	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S							T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S									S	S	S	S							T	T	S							G	G	G	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	.	.	.	G
Query Conservation																																																																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	A	L	E	Q	T	F	E	G	H	E	H	F	V	M	C	V	A	F	N	P	K	D	P	S	T	F	A	S	.	G	C	L	D	R	T	V	K	V	W	S	L	G	Q	S	T	P	N	F	T	L	T	T	G	Q	E	R	G	V	N	Y	V	D	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										S	S									T	T								.			T	T	S							T	T		S	S		S								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
																		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.						.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.
Query SS confidence																																									.	.	.	.	.
Query Sequence		F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	.	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R
Query Conservation																																									.	.	.	.	.
Alig confidence																																									.	.	.	.	.																												.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I	W	D	Y	Q	T	K	S	C	V	A	T	L	E	G	H	M	S	N	V	S	F	A	V	F	H	P	T	L	P	I	I	I	S	G	S	E	D	G	T	L	K	I	W	N	S	S	T	Y	K	V	E	.	.	.	K	T	L	N	V	G
Template Known Secondary structure				S	T	T									T	T	S							T	T	T	T										S	S									S	S	S	S							T	T	S							T	T	T		S			.	.	.						S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	.	.	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		L	E	R	S	W	C	I	A	T	H	P	T	G	R	K	N	Y	I	A	S	G	F	D	N	G	F	T	V	L	S	L	G	N	D	E
Template Known Secondary structure		S	S	S								T	T		G	G	G							T	T								S			S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions