Job Description P75804 Confidence 98.82% Date Thu Jan 5 12:14:23 GMT 2012 Rank 129 Aligned Residues 233 % Identity 13% Template c3lrvA_ PDB info PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. Resolution 2.60 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		M	Y	Y	D	K	W	V	C	M	C	R	C	E	D	G	A	L	H	F	T	Q	L	K	D	S	K	T	I	T	T	I	T	T	P	N	P	R	T	G	G	E	H	.	.	.	.	.	P	A	I	I	S	R	G	P	C	N	R	L	L	L	L	Y	P	G	N	Q	I	T	I	L	D	S	K	T	N	K	V	L	R
Template Known Secondary structure		S	S												T	T								S	S	S	S												T	T				.	.	.	.	.		S						S	T	T							T	T	T							T	T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	D	S	A	N	E	I	I	Y	M	Y	G	H	N	T	E	.	Y	F	I	W	A	D	N	R	G	T	I	G	F	Q	S	Y	E	D	D	S	Q	Y	I	V	H	S	A	K	S	D	V	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S												.							T	T								S	S	S	S										S	S			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280																				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	.	.	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q
Query Conservation																																																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																					.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	G	V	L	H	K	D	S	L	L	L	A	L	Y	.	.	S	P	D	G	I	L	D	V	Y	N	L	S	S	P	D	Q	A	S	S	R	F	P	V	D	E	E	A	K	I	K	E	V	K	F	A	D	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S							.	.		T	T	S							S	S		T	T	S									T	T	S									T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	Y	W	M	V	V	E	C	.	D	Q	T	V	V	C	F	D	L	R	K	D	V	G	T	.	.	.	L	A	Y	P	T	Y	T	I	G	T	V	T	Y	D	I	D	D	S	G	K	N	M	I	A	Y	S	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S							.	S	S	B						T	T	S	S	T	T		.	.	.	B	S	S				B										T	T	S	S							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																.	.	.
Template SS confidence
																											385	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.				.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	N	S	L	T
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions