Job Description P75804 Confidence 99.27% Date Thu Jan 5 12:14:23 GMT 2012 Rank 82 Aligned Residues 294 % Identity 9% Template c3jrpA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade Resolution 2.60 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	.	.	R	R	I	W	L	S	Y	S	E
Query Conservation																																																																							.	.
Alig confidence																																														.	.	.	.	.	.	.	.																		.	.
Template Conservation																																														.	.	.	.	.	.	.	.
Template Sequence		I	A	N	A	H	N	E	L	I	H	D	A	V	L	D	Y	Y	G	K	R	L	A	T	C	S	S	D	K	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	.	.	.	.	.	.	.	.	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y
Template Known Secondary structure																	S	S	S	S							T	T	S									T	T							.	.	.	.	.	.	.	.						S	S										G	G	G		S							T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.									.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L
Query Conservation
Alig confidence																																		.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		D	G	K	V	L	I	W	K	E	E	N	G	R	W	S	Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	.	.	.	.	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A
Template Known Secondary structure		T	S									T	T												S	S								.	.	.	.			G	G	G		S							T	T	S									T	T	S											T	T
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	A	P	A	T	K	E	S	R	K	F	V	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	W	T	Q	D	N	E	Q	G
Template Known Secondary structure									T	T								T	T	S									T	T	T	T												S	S												S	S	S								T	T	S								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Sequence		P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	W	S	L	S	G	N	V	L	A	L	S	G	G	D	N	K	V	T	L	W	K	E	N	L	E	G	.	.
Template Known Secondary structure								S	S	S	S			S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S								S	S	S	S									T	T	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																																	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.									.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.
Query Sequence		E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	.	.	.	.	.	.	.	.	E	S	S	G	E	L	L	K	V	S
Query Conservation																															.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	W	E	P	A	G	E	V	H	D	G	P	C	Q	D	N	A	K	L	I	M	K	E	R	R	F	T	A	S	Y	T	F	A	K	F	S	T	G	S	M	L	L	T	K	D	I	V
Template Known Secondary structure																	T								T	T			T	T								T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions