Job Description P75804 Confidence 99.62% Date Thu Jan 5 12:14:23 GMT 2012 Rank 29 Aligned Residues 249 % Identity 11% Template c3jroA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Resolution 4.00 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	.	.	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T
Query Conservation																																																												.	.
Alig confidence																																								.	.	.	.	.	.	.	.													.	.
Template Conservation																																								.	.	.	.	.	.	.	.
Template Sequence		H	D	A	V	L	D	Y	Y	G	K	R	L	A	T	C	S	S	D	K	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	T	L	T	.	.	.	.	.	.	.	.	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y	D	G	K	V	L	I	W	K	E
Template Known Secondary structure								S	S	S								T	T	T									T	T										.	.	.	.	.	.	.	.			S	S										T	T	S		S							T	T	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50									.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	.	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D
Query Conservation																																														.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	G	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	S										G	G	G		S							T	T	S									S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.																	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	.	.	.	.	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K
Query Conservation																															.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																						.	.	.	.									.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P	A	T	T	K	E	S	R	K	F	V	T	G	.	.	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.											S	S													G	G	G							.	.		T	T	S									T	T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	.	.	T	D	R	G	Q	R	I	R	D	V	R	T	G
Query Conservation																																																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																					.	.	.	.																																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	.	.	.	.	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	W	T	Q	D	N	E	Q	G	P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	A	S	W	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.							S	S												S	.	.	.	.	S	S								S	S	S								S	S	S	S	S			B			B	S	S	S	S			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template SS confidence
												198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	S	G	N	V	.	L	A	L	S	G	G	D	N	K	V	T
Template Known Secondary structure		T	T	T			.						S	S	S
Template Predicted Secondary structure							.
Template SS confidence
		264	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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