Job Description P75804 Confidence 99.71% Date Thu Jan 5 12:14:23 GMT 2012 Rank 25 Aligned Residues 285 % Identity 13% Template c3hfqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Resolution 1.96 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	.	.	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L
Query Conservation																																			.	.
Alig confidence																																			.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		L	T	N	D	G	L	L	A	A	T	Q	N	P	T	Y	L	A	L	S	A	K	D	C	L	Y	S	V	D	K	E	D	D	E	G	G	I	A	A	W	Q	I	D	G	Q	T	A	H	K	L	N	T	V	V	A	P	G	T	P	.	.	.	.	.	.	.	.	P	A	Y	V	A	V	D	E	A	R	Q	L	V	Y
Template Known Secondary structure												S									T	T										T	T											T	T												S			.	.	.	.	.	.	.	.		S						T	T	T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	.	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G
Query Conservation																																							.
Alig confidence								.	.	.	.	.	.																										.
Template Conservation								.	.	.	.	.	.
Template Sequence		S	A	N	Y	H	K	.	.	.	.	.	.	G	T	A	E	V	X	K	I	A	A	D	G	A	L	T	L	T	D	T	V	Q	H	S	G	H	G	P	R	P	E	Q	D	G	S	H	I	H	Y	T	D	L	T	P	D	N	R	L	A	V	I	D	L	G	S	D	K	V	Y	V	Y	N	V	S	D	A	G	Q	L
Template Known Secondary structure					T	T	T	.	.	.	.	.	.	T									T	T	S															S	S	T	T		S	S										T	T	S							T	T	T	T									T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	Q	S	V	L	T	X	E	A	G	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	H	L	V	F	S	P	D	G	Q	Y	A	F	L	A	G	E	L	S	S	Q	I	A	S	L	K	Y	D	T	Q	T	G	A	F	T	Q	L	G	I	V	K	T	I	P	A
Template Known Secondary structure											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S							T	T	T	T									T	T	T	T										S	S		T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.																						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	T	A	H	N	G	A	A	A	I	R	L	S	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	F	L	Y	V	S	N	R	G	Y	N	T	L	A	V	F	A	V	T	A	D	G	H	L	T	L	I	Q	Q	I	S	T	E	G	D	F
Template Known Secondary structure		T			S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									T	T	T									T	T	S											S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250																												.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure													.						.
Query SS confidence													.						.
Query Sequence		I	R	D	V	R	T	G	P	D	G	Y	.	L	Y	V	L	T	.	D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation													.						.
Alig confidence													.						.
Template Conservation
Template Sequence		P	R	D	F	D	L	D	P	T	E	A	F	V	V	V	V	N	Q	N	T	D	N	A	T	L	Y	A	R	D	L	T	S
Template Known Secondary structure									T	T	S	S							T	T	T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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