Phyre 2 alignment of P75804 with c3greA

Job Description P75804
Confidence 99.09% Date Thu Jan 5 12:14:23 GMT 2012

Rank 106 Aligned Residues 324

% Identity 11% Template c3greA_

PDB info PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	24	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure											.															.
Query SS confidence											.															.
Query Sequence	T	V	N	V	E	V	L	Q	D	K	.	L	D	H	P	W	A	L	A	F	L	P	D	N	H	.	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W
Query Conservation											.															.
Alig confidence											.															.																																					.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence	G	K	L	I	A	T	L	M	E	N	E	P	N	S	I	T	S	S	A	V	S	P	G	E	T	P	Y	L	I	T	G	S	D	Q	G	V	I	K	I	W	N	L	K	E	I	I	V	G	E	V	Y	S	S	S	L	T	Y	D	C	S	S	T	.	.	.	.	.	V	T	Q	I	T	M	I	P	N	F	D	A	F
Template Known Secondary structure									T	T	T	T	S										S	S	S								T	T	S												T	T				S		S						S	S		.	.	.	.	.								T	T	S	S
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
	1069	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130						.	.	.	.	.	.	.	.	.	1140	.	.	.

	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence	A	V	S	S	K	D	G	Q	I	I	V	L	K	V	N	H	Y	Q	Q	E	S	E	V	K	F	L	N	C	.	.	E	C	I	R	K	I	N	L	K	N	F	G	K	N	E	Y	A	V	R	M	R	A	F	V	N	E	E	K	S	L	L	V	A	L	T	N	L	S	R	V	I	I	F	D	I	R	T	L	E	R
Template Known Secondary structure					T	T	S													T	T								.	.								G	G	G	G	S	S													S	S									T	T	S							T	T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
	1144	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.			.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																								.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	Q	I	I	E	N	S	P	R	H	G	A	V	S	S	I	C	I	D	E	E	C	C	V	L	I	L	G	T	T	R	G	I	I	D	I	W	D	I	R	F	N	V	L	I	R	S	W	S	F	G	D	H	A	P	I	T	H	V	E	V	C	Q	F	Y	G	K	N	S	V	I	V	V	G	G	S	S	K	T	F
Template Known Secondary structure								G	G	G										T	T	S								T	T	S							T	T	T	T							B		T	T											T	T	T		T	T								S	T	T
Template Predicted Secondary structure
Template SS confidence
	1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	T	I	W	N	F	V	K	G	H	C	Q	Y	A	F	I	N	S	D	E	Q	P	S	M	E	H	F	L	P	I	E	K	G	L	E	E	L	N	F	C	G	I	R	S	L	N	A	L	S	T	I	S	V	S	.	.	.	.	.	.	.	.	.	.	.	.	N	D	K	I	L	L	T	D	E	A	T	S	S	I
Template Known Secondary structure						T	T	T	T								S	S	S	S				G	G	G	G	S		B		S	S	G	G	G								S	G	G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	T	T							G	G	G	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1302	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.													.	.	.	.	1360	.	.	.	.	.	.	.	.	.

	319	320	.	.	.	.	.	.	.	.																				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Query Sequence	I	V	M	S	V	N	G	D	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	.	.	G	P	D	G	Y	L	Y	V	L	T	D	.	E	S	S	G	E	L	L	K
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Template Conservation
Template Sequence	V	M	F	S	L	N	E	L	S	S	S	K	A	V	I	S	P	F	S	D	V	F	I	P	T	Q	V	T	A	N	L	T	M	L	L	R	K	M	K	H	D	I	I	N	S	I	S	T	C	E	V	D	E	T	P	L	L	V	A	C	D	N	S	G	L	I	G	I	F	Q
Template Known Secondary structure					T	T		G	G	G																			T	T																					S	S	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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