Job Description P75804 Confidence 99.57% Date Thu Jan 5 12:14:23 GMT 2012 Rank 34 Aligned Residues 286 % Identity 12% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.
Predicted Secondary structure																				.																																																				.
Query SS confidence																				.																																																				.
Query Sequence		V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	.	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	.	Q	S	R	R	I	W	L	S	Y
Query Conservation																				.																																																				.
Alig confidence																				.																													.	.	.	.	.	.	.	.																.
Template Conservation																																																	.	.	.	.	.	.	.	.
Template Sequence		L	Q	K	A	A	P	F	D	R	R	A	T	S	L	A	W	H	P	T	H	P	S	T	V	A	V	G	S	K	G	G	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	.	.	.	.	.	.	.	.	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S
Template Known Secondary structure									S	S									S	S		S	S							S	S	S							S	S	S		S						.	.	.	.	.	.	.	.				S	S	S								B		T	T		T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150									.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	M	E	G	T	T	R	L	Q	D	F	K	G	N	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	F	A	S	S	D	T	I	N	I	W	F	C	S	L	D	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W	N	L	R
Template Known Secondary structure			T	T	S							T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	T	T										T	T	T	T							S	S	S							T	T			B
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
																	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F	L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	V	R	G	K	A	S	F	L	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	T	T	.	.	D	Q	K	S	E	I	R	V	Y	S	A
Template Known Secondary structure			S	S	S									T	T	S	T	T							T	T	S							T	T	T			S	S	S			S						S	S									T	T	S	S						.	.		S	S	S							T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	.	.	.	.	.	.	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	F	K	S	C	T	P	Y	E	L	R	T	I
Template Known Secondary structure		T		S	S	S		S											T	T	S									S	S	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S			S	S	S				S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.																										.	360	.	.	.	.	.	.	.	.	.	370	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	.	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation																													.
Alig confidence														.	.														.
Template Conservation														.	.
Template Sequence		D	V	F	D	G	N	S	G	K	M	M	C	.	.	Q	L	Y	D	P	E	S	S	G	I	S	S	L	N	E	F	N	P	M	G	D	T	L	A	S	A	M	G	Y	H	I	L	I	W
Template Known Secondary structure						S	S	S						.	.					T	T	T		S									S	S	S	S	S						T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions