Phyre 2 alignment of P75804 with c3dsmA

Job Description P75804
Confidence 99.05% Date Thu Jan 5 12:14:23 GMT 2012

Rank 109 Aligned Residues 255

% Identity 12% Template c3dsmA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d.

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G
Query Conservation
Alig confidence										.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	V	A	Q	S	X	V	I	R	.	D	G	I	G	W	I	V	V	N	N	S	H	V	I	F	A	I	D	I	N	T	F	K	E	V	G	R	I	.	.	.	.	.	.	.	.	.	.	.	T	G	F	T	S	P	R	Y	I	H	F	L	S	D	E	K	A	Y	V	T	Q	I	W	D	Y	R	I	F	I	I	N
Template Known Secondary structure	S									.	T	T							G	G	G	T							T	T	T								.	.	.	.	.	.	.	.	.	.	.				S	S									T	T							B	S		S
Template Predicted Secondary structure										.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	58	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.												.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	K	T	Y	E	I	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	E	C	P	D	X	D	X	E	S	G	S	T	E	Q	X	V	Q	Y	G	K	Y	V	Y	V	N	C	W	S	Y	Q	N	R	I	L	K	I	D	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	T	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T			T	T	T		B								T	T								T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	126	.	.	.	130	.	.	.															.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	T	D	K	V	V	D	E	L	T	I	G	I	Q	P	T	S	L	V	X	D	K	Y	N	K	X	W	T	I	T	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	E	G	S	P	Y	G	Y	E	A	P	S	L	Y	R	I	D	A	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	T	T									S	S		B							T	T	S						B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		T	T		S	S		B										T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	.	Y	L
Query Conservation																																																																														.
Alig confidence																									.	.	.	.	.	.																														.	.	.	.															.
Template Conservation																									.	.	.	.	.	.																														.	.	.	.
Template Sequence	T	F	T	V	E	K	Q	F	K	F	K	L	G	D	W	P	S	E	V	Q	L	N	G	T	.	.	.	.	.	.	R	D	T	L	Y	W	I	N	N	D	I	W	R	X	P	V	E	A	D	R	V	P	V	R	P	F	L	E	F	.	.	.	.	R	D	T	K	Y	Y	G	L	T	V	N	P	N	N	G	E	V
Template Known Secondary structure	T	T										T	T										T	T	.	.	.	.	.	.	S							S	S	S						T	T		S	S			S	S		S	B			.	.	.	.		S	S									T	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.																														.	.	.	.
Template SS confidence
	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.							250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	354	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence	Y	V	L	T	D	E	.	.	.	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence	Y	V	A	D	A	I	D	Y	Q	Q	Q	G	I	V	Y	R	Y	S	P	Q	G
Template Known Secondary structure						T	T	S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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