Job Description P75804 Confidence 99.84% Date Thu Jan 5 12:14:23 GMT 2012 Rank 12 Aligned Residues 297 % Identity 14% Template c3bwsA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Resolution 1.99 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W
Query Conservation
Alig confidence																																																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		G	I	T	H	R	F	I	S	R	F	K	T	G	F	Q	P	K	S	V	R	F	I	D	N	T	R	L	A	I	P	L	L	E	D	E	G	X	D	V	L	D	I	N	S	G	Q	T	V	R	L	S	P	P	E	.	.	.	.	.	K	Y	K	K	K	L	G	F	V	E	T	I	S	I	P	E	H	N	E	L	W
Template Known Secondary structure		T		S										S	S		B						S	S	S	S						B	T	T	S	S	S						T	T	T											.	.	.	.	.				T	T										G	G	G	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Sequence		V	S	Q	X	Q	A	N	A	V	H	V	F	D	L	K	T	L	A	Y	K	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	L	T	G	K	W	S	K	I	L	L	Y	D	P	I	R	D	L	V	Y	C	S	N	W	I	S	E	D	I	S	V	I	D	R	K	T	.	.	.
Template Known Secondary structure					G	G	G	T							T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S	S								T	T	T	T							T	T	T	T							T	T	T	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.																			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.							.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	.	.	.	.	.	.	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A
Query Conservation																																																							.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																						.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	E	I	R	K	T	D	K	I	.	G	L	P	R	G	L	L	L	S	K	D	G	K	E	L	Y	I	A	Q	F	S	A	S	N	Q	E	S	G	G	G	R	L	G	I	Y	S	X	D	K	E	K	L	I	D	T	I	G	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										.	S									T	T	S	S									S		T	T		S										T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
																							267	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.	.	310	.	.																.	.	.	.
Predicted Secondary structure																																														.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	.	.	.	.	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	D	K
Query Conservation																																														.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	N	K	R	H	I	V	S	G	N	T	E	N	K	I	Y	V	S	D	X	C	C	S	K	I	E	V	Y	D	L	K	E	K	K	V	Q	K	S	I	P	V	F	D	K	P	N	T	I	A	L	S	P	D	G	K	Y	L	Y	V	S	C	R	G	P	N	H	P	T	E	G	Y	L	K	K	G	L	V	L	G
Template Known Secondary structure												S	S	T	T							T	T	T	T							T	T	T	T									S	S	S								T	T	S	S												T	T	T		T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation
Alig confidence																			.	.	.	.																												.
Template Conservation																			.	.	.	.																												.
Template Sequence		K	V	Y	V	I	D	T	T	T	D	T	V	K	E	F	W	E	.	.	.	.	A	G	N	Q	P	T	G	L	D	V	S	P	D	N	R	Y	L	V	I	S	D	F	L	D	H	Q	I	.	R	V	Y	R	R	D
Template Known Secondary structure								T	T	T	T								.	.	.	.		S	S	S								T	T	S								T	T	T	T			.						T
Template Predicted Secondary structure																			.	.	.	.																												.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.					.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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