Phyre 2 alignment of P75804 with c3bg1E

Job Description P75804
Confidence 99.22% Date Thu Jan 5 12:14:23 GMT 2012

Rank 87 Aligned Residues 263

% Identity 11% Template c3bg1E_

PDB info PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane

Resolution 3.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	D	A	Q	M	D	Y	Y	G	T	R	L	A	T	C	S	S	D	R	S	V	K	I	F	D	V	R	N	G	G	Q	I	L	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							G	G	G								T	T	T									T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.

	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	.	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N
Query Conservation																																											.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	G	H	E	G	P	V	W	Q	V	A	W	A	H	P	M	Y	G	N	I	L	A	S	C	S	Y	D	R	K	V	I	I	W	R	E	E	N	G	T	W	E	K	S	H	E	H	A	G	H	D	S	S	V	N	S
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S										G	G	G	S	S							T	T	S								S	S	S												S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																									53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	.	.	.	.	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E
Query Conservation																																																												.	.	.	.
Alig confidence																																																												.	.	.	.
Template Conservation
Template Sequence	V	C	W	A	P	H	D	Y	G	L	I	L	A	C	G	S	S	D	G	A	I	S	L	L	T	Y	T	G	E	G	Q	W	E	V	K	K	I	N	N	A	H	T	I	G	C	N	A	V	S	W	A	P	A	V	V	P	P	S	G	Q	K	P	N	Y	I	K	R	F	A	S	G	G	C	D	N	L	I	K	L	W
Template Known Secondary structure						T	T	T		S							S	S	S									S	S	S							B	T	T	S	S	S	S		B														S								B					B	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	.	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence	K	E	E	E	D	G	Q	W	K	E	E	Q	K	L	E	A	H	S	D	W	V	R	D	V	A	W	A	P	S	I	G	L	P	T	S	T	I	A	S	C	S	Q	D	G	R	V	F	I	W	T	C	D	D	A	S	S	N	T	W	S	P	K	L	L	H	K	F	N	D	V	V	W	H	V	S	W	S	I	T	A
Template Known Secondary structure				T	T	S									B			S	S											S	S		S									T	T											S	S	S												S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

	352		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence	Y	.	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence	N	I	L	A	V	S	G	G	D	N	K	V	T	L	W	K	E	S
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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