Job Description P75804 Confidence 99.33% Date Thu Jan 5 12:14:23 GMT 2012 Rank 74 Aligned Residues 289 % Identity 12% Template c2zkqa_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	.	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S
Query Conservation																					.
Alig confidence									.												.																									.	.	.	.	.
Template Conservation									.																																					.	.	.	.	.
Template Sequence		R	G	T	L	K	G	H	.	G	W	V	T	Q	I	A	T	T	P	Q	F	P	D	M	I	L	S	A	S	R	D	K	T	I	I	M	W	K	L	T	R	D	E	T	N	.	.	.	.	.	Y	G	I	P	Q	R	A	L	R	G	H	S	H	F	V	S	D	V	V	I	S	S	D	G	Q	F	A	L	S	G	S
Template Known Secondary structure									.			B								S	S	T	T							T	T	S							S	S	S	S				.	.	.	.	.								S	S	S				S		S						T	T	S	S
Template Predicted Secondary structure									.																																					.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Sequence		W	D	G	T	L	R	L	W	D	L	T	T	G	T	T	T	R	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	H	T	K	D	V	L	S	V	A	F	S	S	D	N	R	Q	I	V	S	G	S	R	D	K	T	I	K	L	W	N	T	L	G	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T								S	S	S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S								S	S	S	S							T	T	T							T	T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	K	Y	T	V	Q	D	E	S	S	E	W	V	S	C	V	R	F	S	P	N	S	S	N	P	I	I	V	S	C	G	W	D	K	L	V	K	V	W	N	L	A	N	C	K	L	K	T	N	H	I	G	H	T	G	Y	L	N	T	V	T	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T		S	S	S	S							T	T	S							T	T	T		S									S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.																									.	.	.	.	.	.
Query SS confidence																																							.	.	.																									.	.	.	.	.	.
Query Sequence		I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	.	.	.	.	.	.	K	V	T	E	D	G	R	I	L	T
Query Conservation																																							.	.	.																									.	.	.	.	.	.
Alig confidence																																							.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	D	G	S	L	C	A	S	G	G	K	D	G	Q	A	M	L	W	D	L	N	E	G	K	H	L	Y	T	L	D	G	G	D	I	I	N	A	L	C	F	S	P	N	R	Y	W	L	C	A	A	T	G	P	S	I	K	I	W	D	L	E	G	K	I	I	V	D	E	L	K	Q	E	V	I	S	T	S	S	K
Template Known Secondary structure			T	T	S	S							T	T	S							T	T	T	T								S	S									T	T	S	S							S	S	S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		A	E	P	P	Q	C	T	S	L	A	W	S	A	D	G	Q	.	T	L	F	A	G	Y	T	D	N	L	V	R
Template Known Secondary structure				S	S									S	S	T	T	.							T	T	B
Template Predicted Secondary structure																		.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions