Job Description P75804 Confidence 99.22% Date Thu Jan 5 12:14:23 GMT 2012 Rank 88 Aligned Residues 314 % Identity 11% Template c2xznR_ PDB info PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	.	.	.	.	.	.	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																							.	.	.
Template Conservation																																																															.	.	.
Template Sequence		K	R	G	I	L	E	G	H	S	D	W	V	T	S	I	V	A	G	F	S	Q	K	E	N	E	D	S	P	V	L	I	S	G	S	R	D	K	T	V	M	I	W	K	L	Y	E	E	E	Q	N	G	Y	F	G	I	P	H	K	A	L	T	.	.	.	G	H	N	H	F	V	S	D	L	A	L	S	Q	E	N	C
Template Known Secondary structure										S	S											S	S	T	T											T	T	S									S	S			S	S	B	S									.	.	.			S	S									S	S	T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Sequence		F	A	I	S	S	S	W	D	K	T	L	R	L	W	D	L	R	T	G	T	T	Y	K	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	H	Q	S	E	V	Y	S	V	A	F	S	P	D	N	R	Q	I	L	S	A	G	A	E	R	E	I	K	L	W	.	.	.	.	N	I
Template Known Secondary structure								T	T	S							T	T	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S									S	S	T	T							T	T	S						.	.	.	.		S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	E	C	K	F	S	S	A	E	K	E	N	H	S	D	W	V	S	C	V	R	Y	S	P	I	M	K	S	A	N	K	V	Q	P	F	A	P	Y	F	A	S	V	G	W	D	G	R	L	K	V	W	N	T	N	F	Q	I	R	Y	T	F	K	A	H	E	S	N	V	N	H	L	S	I	S	P	N	G	K	Y
Template Known Secondary structure		S	S								T	T	T	S		S	S													S		S				S	S									T	T	S							T	T	T										S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		I	A	T	G	G	K	D	K	K	L	L	I	W	D	I	L	N	L	T	Y	P	Q	R	E	F	D	A	G	S	T	I	N	Q	I	A	F	N	P	K	L	Q	W	V	A	V	G	T	D	Q	G	V	K	I	F	N	L	M	T	Q	S	K	A	P	V	C	T	I	E	A	E	P	I	T	K	A	E	G	Q	K	G
Template Known Secondary structure							T	T								S	S			S	S		S						S	S									S	S	S								S	S							S	S	S			S		S								S	G	G	G	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		K	N	P	Q	C	T	S	L	A	W	N	A	L	G	K	.	K	L	F	A	G	F	T	D	G	V	I	R
Template Known Secondary structure		S											S	S	S		.							T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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