Job Description P75804 Confidence 93.11% Date Thu Jan 5 12:14:23 GMT 2012 Rank 163 Aligned Residues 286 % Identity 10% Template c2xbgA_ PDB info PDB header:photosynthesis Chain: A: PDB Molecule:ycf48-like protein; PDBTitle: crystal structure of ycf48 from thermosynechococcus2 elongatus Resolution 1.50 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G
Query Conservation
Alig confidence																					.												.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Conservation																					.												.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Sequence		A	T	I	L	D	M	S	F	I	D	R	H	H	G	W	L	V	G	V	.	N	A	T	L	M	E	T	R	D	G	G	.	.	.	.	.	.	.	Q	T	W	E	P	R	T	L	V	L	D	H	S	D	Y	R	F	N	S	V	S	F	Q	G	N	E	G	W	I	V	G	E	P	P	.	.	.	.	.	.	.	.
Template Known Secondary structure		S								S	S	S	S							T	.	T	T						S	S	T	T	.	.	.	.	.	.	.	S	S									S													T	T								T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.												.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D
Query Conservation
Alig confidence		.	.	.													.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.	.	.													.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		.	.	.	I	M	L	H	T	T	D	G	G	Q	S	W	.	.	.	.	.	.	.	S	Q	I	P	L	D	P	K	L	P	G	S	P	R	L	I	K	A	L	G	N	G	S	A	E	M	I	T	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	Y	R	T	K	D	S	G	K	N	W	.
Template Known Secondary structure		.	.	.						S	S	T	T	S	S		.	.	.	.	.	.	.							T	T		S	S										T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	T	T	S	S		.
Template Predicted Secondary structure		.	.	.													.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
					120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.															.	.	.	.	.	.	.	.	170	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	Q	A	L	V	Q	E	A	I	G	V	M	R	N	L	N	R	S	P	S	G	E	Y	V	A	V	S	S	R	G	S	F	Y	S	T	W	E	P	G	Q	T	A	W	E	P	H	N	R	T	T	S	R	R	L	H	N	M	G	F	T	P	D	G	R	L	W	M	I	V	N	G	G	K	I	A	F	S	D	P
Template Known Secondary structure		.	.						S												T	T	S							T	T	S	S							T	T		S	S								S	S	S									T	T	S							T	T	T							T
Template Predicted Secondary structure		.	.
Template SS confidence
				175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y
Query Conservation
Alig confidence																													.	.	.																			.	.
Template Conservation																													.	.	.																			.	.
Template Sequence		D	N	S	E	N	W	G	E	L	L	S	P	L	R	R	N	S	V	G	F	L	D	L	A	Y	R	T	.	.	.	P	N	E	V	W	L	A	G	G	A	G	A	L	L	C	S	Q	D	.	.	G	G	Q	T	W	Q	Q	D	V	D	V	K	K	V	P	S	N	F	Y	K	I	L	F	F	S	P	D	Q	G	F
Template Known Secondary structure		T									B		T	T	S	S			S								S	S	.	.	.	S	S							S	T	T						S	S	.	.	T	T	S	S					G	G	G	T	T	S	S	S										T	T
Template Predicted Secondary structure																													.	.	.																			.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	D	E	S	S	G	E	L	L	K	V	S	P	R
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		I	L	.	.	G	Q	K	G	I	L	L	R	Y	V	T	D
Template Known Secondary structure				.	.		S	T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		328	.			330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions