Job Description P75804 Confidence 100.00% Date Thu Jan 5 12:14:23 GMT 2012 Rank 4 Aligned Residues 318 % Identity 17% Template c2wg3C_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:hedgehog-interacting protein; PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium Resolution 2.60 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																											.																.														.	.	.	.	.
Query SS confidence																											.																.														.	.	.	.	.
Query Sequence		A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	.	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	.	A	G	K	G	L	S	A	P	L	S	G	V	P	.	.	.	.	.	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A
Query Conservation																											.																.														.	.	.	.	.
Alig confidence																											.																.														.	.	.	.	.
Template Conservation
Template Sequence		N	C	F	C	I	Q	E	V	V	S	G	L	R	Q	P	V	G	A	L	H	S	G	D	G	S	Q	R	L	F	I	L	E	K	E	G	Y	V	K	I	L	T	P	E	G	E	I	F	K	E	P	Y	L	D	I	H	K	L	V	Q	S	G	I	K	G	G	D	E	R	G	L	L	S	L	A	F	H	P	N	Y	K
Template Known Secondary structure														S	S								S	S	S	S								T	T	T							T	T	S		B		S	S		S				T	T	T	B					S	S	S				S								T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																.
Query SS confidence																		.	.	.	.	.																.
Query Sequence		Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	.	.	.	.	.	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	.	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q
Query Conservation																		.	.	.	.	.																.
Alig confidence																		.	.	.	.	.																.
Template Conservation
Template Sequence		K	N	G	K	L	Y	V	S	Y	T	T	N	Q	E	R	W	A	I	G	P	H	D	H	I	L	R	V	V	E	Y	T	V	S	R	K	N	P	H	Q	V	D	L	R	T	A	R	V	F	L	E	V	A	E	L	H	R	K	H	L	G	G	Q	L	L	F	G	P	D	G	F	L	Y	I	I	L	G	D	G	M	I
Template Known Secondary structure																S	S		S	S	S	S											B		T	T		T	T	S	B		G	G	G										S	S	S	S	S									T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence			.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		R	.	.	.	.	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	.	.	.	.	.	.	.	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G
Query Conservation			.	.	.	.																					.	.	.	.	.	.	.
Alig confidence			.	.	.	.																					.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	D	D	M	E	E	M	D	G	L	S	D	F	T	G	S	V	L	R	L	D	V	D	T	D	M	C	N	V	P	Y	S	I	P	R	S	N	P	H	F	N	S	T	N	Q	P	P	E	V	F	A	H	G	L	H	D	P	G	R	C	A	V	D	R	H	P	T	D	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T			S		T	T						B						S	S		S		B			T	T	S	T	T	T	T		S	S	S		T	T							S	S			B					S	S		S	S	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V
Query Conservation
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	N	I	N	L	T	I	L	C	S	D	S	S	A	R	I	L	Q	I	I	Y	E	S	E	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	E	F	K	P	P	L	V	G	G	F	V	Y	R	G	C	Q	S	E	R	L	Y	G	S	Y	V	F	G	D	R	N	G	N	F	L
Template Known Secondary structure		.	T		S																			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	S	S		T	T	T	T	T							T	T	S
Template Predicted Secondary structure		.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.																			470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		319	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.																																						.	.	.	.	.	.
Query SS confidence				.	.	.																																						.	.	.	.	.	.
Query Sequence		I	V	.	.	.	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	.	.	.	.	.	.	D	E	S	S	G	E	L	L	K	V	S	P
Query Conservation				.	.	.																																						.	.	.	.	.	.
Alig confidence				.	.	.																																						.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	Q	Q	Q	W	Q	E	K	P	L	C	L	G	T	S	G	S	C	R	G	Y	F	S	G	H	I	L	G	F	G	E	D	E	L	G	E	V	Y	I	L	S	S	S	K	S	M	T	Q	T	H	N	G	K	L	Y	K	I	V	D
Template Known Secondary structure																	T	T	S	S		S				S									T	T									S	S		G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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