Job Description P75804 Confidence 99.27% Date Thu Jan 5 12:14:23 GMT 2012 Rank 83 Aligned Residues 287 % Identity 10% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	.	.	.	.	.	.	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R
Query Conservation																	.	.	.	.	.	.
Alig confidence								.									.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation								.																																																			.	.	.	.	.	.	.
Template Sequence		N	L	Q	L	V	S	.	E	L	K	N	P	S	G	S	C	S	V	D	V	S	A	M	F	W	E	K	E	P	C	I	I	T	A	C	E	D	V	V	S	L	W	K	A	L	D	A	W	Q	W	E	K	L	Y	T	W	H	.	.	.	.	.	.	.	F	A	E	V	P	V	L	Q	I	V	P	V	P	D	V	Y
Template Known Secondary structure								.							S	S																					S	S								S	S	S	S	B									.	.	.	.	.	.	.			S	S									T	T
Template Predicted Secondary structure								.																																																			.	.	.	.	.	.	.
Template SS confidence
		854	.	.	.	.	.		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.								910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	V	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	L	G	N	L	E	I	R	E	I	R	A	L	F	C	E	K	Q	V	L	L	K	S	G	N	I	K	A	V	L	G	L	T	K	R	R
Template Known Secondary structure		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S																											T	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		930	.	.	.																																								.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I
Query Conservation
Alig confidence																																																						.
Template Conservation																																																						.
Template Sequence		L	V	S	S	S	G	T	L	S	D	Q	Q	V	E	V	M	T	F	A	E	D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q	E	A	L	L	G	.	T	T	I	M	N	N	I	V	I	W	N	L	K	T	G	Q	L	L	K	K	M	H	I	D	D	A	S
Template Known Secondary structure							S	S	S	T	T										T	T	S												S	S										T	S	T	T					.			T	T	S							T	T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		977	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.		.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.									.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.
Query Sequence		N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	.	.	.	.	.	.	.	.	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D
Query Conservation																																													.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	C	H	K	A	Y	S	E	M	G	L	L	F	I	V	L	S	P	V	F	Q	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	P	P	G	Q	A	G	R	F	L	E	G	D	V	K	D	H	C	A	A	A	I	L	T	S	G	T	I	A	I	W	D	L	L	L	G	Q	C	T	A	L
Template Known Secondary structure										T	T																	T	T	T	T												T	T												T	T							T	T	S							T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		1059	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence				.	.	.	.																.
Template Conservation				.	.	.	.																.
Template Sequence		L	P	.	.	.	.	P	V	Q	H	W	S	F	V	K	W	S	G	T	D	S	.	H	L	L	A	G	Q	K	D	G	N	I	F
Template Known Secondary structure				.	.	.	.												S	S	S	S	.							T	T	S
Template Predicted Secondary structure				.	.	.	.																.
Template SS confidence
		1151	.					.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.		.	.	1170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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