Job Description P75804 Confidence 98.81% Date Thu Jan 5 12:14:23 GMT 2012 Rank 130 Aligned Residues 256 % Identity 10% Template c2vduB_ PDB info PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex Resolution 2.40 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	.	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V
Query Conservation																																																															.
Alig confidence																	.																							.	.	.	.																				.
Template Conservation																	.																							.	.	.	.
Template Sequence		N	L	L	T	S	R	D	G	S	L	V	F	A	I	I	.	K	N	C	I	L	S	F	K	Y	Q	S	P	N	H	W	E	F	A	G	K	W	S	.	.	.	.	D	D	F	P	I	Y	S	Y	I	R	N	L	R	L	T	S	D	E	S	R	L	I	A	C	A	D	S	D	K	S	L	L	V	F	D	V	D	K
Template Known Secondary structure							S	S	S	S							.	T	T									T	T	T										.	.	.	.																T	T	S	S							G	G	G	T									S
Template Predicted Secondary structure																	.																							.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	K	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	R	K	R	F	C	F	S	K	R	P	N	A	I	S	I	A	E	D	D	T	T	V	I	I	A	D	K	F	G	D	V	Y	S	I	D	I	N	S	I	P	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.										S	S									T	T	S	S							T	T	S							T	T	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	.	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G
Query Conservation																															.
Alig confidence		.	.	.	.	.																									.																																										.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	K	F	T	Q	E	P	I	L	G	H	V	S	M	L	T	D	V	H	L	I	K	D	S	D	G	H	Q	F	I	I	T	S	D	R	D	E	H	I	K	I	S	H	Y	P	Q	C	F	I	V	D	K	W	L	F	G	H	K	H	F	V	S	S	I	C	C	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	S						S				S	S											T	T	S									T	T	S								S		T	T										S	S									.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
							185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.													.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D	R	G	Q	R	I	R	D
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	Y	L	L	L	S	A	G	G	D	D	K	I	F	A	W	D	W	K	T	G	K	N	L	S	T	F	D	Y	N	S	L	I	K	P	Y	L	N	D	Q	H	L	A	I	I	E	F	A	V	S	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T							S	S	S							T	T	T														G	G	G			T	T	S	B			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																														251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S	P	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	K	S	K	N	L	P	F	V	A	F	F	V	E	A	T	K	C	I	I	I	L	E	M	S	E
Template Known Secondary structure						S	S	S	S							T	T		S									S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions