Job Description P75804 Confidence 99.36% Date Thu Jan 5 12:14:23 GMT 2012 Rank 68 Aligned Residues 306 % Identity 10% Template c2pm9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat Resolution 3.30 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.												.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	.	.	.	.	.	.	.	.	.	.	.	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.
Template Sequence		A	E	F	S	R	T	A	T	F	A	W	S	H	D	K	I	P	L	L	V	S	G	T	V	S	G	T	V	D	A	N	F	S	T	D	S	S	L	E	L	W	S	L	L	A	A	D	S	E	K	P	I	.	.	.	.	.	.	.	.	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I
Template Known Secondary structure							S		B			B		S	S	S	S						B		B	S	S				S	S												S	S	S	G	G	G		S		S	.	.	.	.	.	.	.	.						S	S									S	S	S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	G	A	L	D	N	G	S	L	E	L	Y	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	A	N	N	A	I	N	S	M	A	R	F	S	N	H	S	S	S	V	K	T	V	K	F	N	A	K	Q	D	N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T
Template Known Secondary structure							S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	T	T	S											S	S	S									S	S	S	T	T	B						S	S	S				B		B	T	T	T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.															.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
							181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																										.	.	.
Template Conservation																																																																.	.	.
Template Sequence		E	S	P	S	N	Y	T	P	L	T	P	G	Q	S	M	S	S	V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N	F	A	S	I	W	D	L	K	A	K	K	E	V	I	H	L	S	Y	T	S	P	.	.	.	N	S	G	I	K	Q	Q	L	S	V	V	E	W	H	P
Template Known Secondary structure		S		T	T	T				B					S			S	S										S	S		T	T						S	S	S	S							T	T	T	T												.	.	.	S	S													S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L
Query Conservation
Alig confidence																																																																												.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I	W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L	D	W	C	H	Q	D	E	H	L	L	L	S	S	G	R	D	N	T	V	L	L	W	N	P	E	S	A	E	Q	L	.	.	.	S	Q	F
Template Known Secondary structure		S		T	T									S	S	S								T	T	S	T	T	S		S	B				S			S	S									S	S		S	S							S	S	S							S	S	S					.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	R	G	N	W	C	F	K	T	K	F	A	P	E	A	P	D	L	F	A	C	A	S	F	D	N	K	I	E
Template Known Secondary structure				S	S	S									T	T		T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions