Job Description P75804 Confidence 98.93% Date Thu Jan 5 12:14:23 GMT 2012 Rank 120 Aligned Residues 291 % Identity 12% Template c2p9wA_ PDB info PDB header:allergen Chain: A: PDB Molecule:mal s 1 allergenic protein; PDBTitle: crystal structure of the major malassezia sympodialis allergen mala s2 1 Resolution 1.35 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	.	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y
Query Conservation																									.
Alig confidence											.														.
Template Conservation											.
Template Sequence		Q	I	D	V	K	V	K	N	L	.	T	P	E	D	T	I	Y	D	R	T	R	Q	V	F	Y	Q	S	N	L	Y	K	G	R	I	E	V	Y	N	P	K	T	Q	S	H	F	N	V	V	I	D	G	A	S	S	N	G	D	G	E	Q	Q	M	S	G	L	S	L	L	T	H	D	N	S	K	R	L	F	A	V	M
Template Known Secondary structure								T	T		.			S						T	T	T	T							T	T	T	T							T	T	T									T	T	T			S	S			S									S	S	S	S	S
Template Predicted Secondary structure											.
Template SS confidence
		27	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.						140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		S	E	V	G	D	D	G	K	A	G	.	.	.	.	.	.	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	.	.	.	.	.	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A
Query Conservation												.	.	.	.	.	.																										.	.	.	.	.
Alig confidence												.	.	.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		K	N	A	K	S	F	N	F	A	D	Q	S	S	H	G	A	S	S	F	H	S	F	N	L	P	L	S	E	N	S	K	P	V	W	S	V	N	F	E	K	V	Q	D	E	F	E	K	K	A	G	K	R	P	F	G	V	V	Q	S	A	Q	D	R	D	G	N	S	Y	V	A	F	A	L	G	M	P	A	I	A	R
Template Known Secondary structure				T	T	T	T		T	T	S			S	S	S									S	S			T	T				S					S												S	S												T	T	S									S	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.
Template Sequence		V	S	A	D	G	K	T	V	S	T	F	A	W	E	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	G	Q	R	P	G	Y	S	G	I	T	F	D	P	.	H	S	N	K	L	I	A	F	.	G	G	P	R	A	L	T	A	F	D	V	S	K	P	Y	A	W	P	E	P
Template Known Secondary structure				T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S			S		S						T	.	T	T	T						.	S	S	S	S	S							S	S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.									.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	I	N	G	D	F	G	T	L	S	G	T	E	K	I	V	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	G	N	E	S	V	L	V	G	A	R	A	P	Y	A	I	S	F	R	S	W	D	N	W	K	S	A	N	I	K
Template Known Secondary structure					S	S						T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									T	T								S	S	T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.																															.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		334							.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.										.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Query Sequence		I	.	.	.	.	.	.	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	.	.	.	.	.	.	.	.	.	D	E	S	S	G	E	L	L	K	V	S
Query Conservation			.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	K	R	S	E	L	Q	N	S	G	F	T	A	V	A	D	Y	Y	Q	G	S	E	Q	G	L	Y	A	V	S	A	F	F	D	N	G	A	H	G	G	R	S	D	Y	P	L	Y	K	L	D
Template Known Secondary structure						G	G	G	G	S	S											T	T											G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions