Job Description P75804 Confidence 99.00% Date Thu Jan 5 12:14:23 GMT 2012 Rank 115 Aligned Residues 319 % Identity 11% Template c2ovqB_ PDB info PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex Resolution 2.60 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	A	P	A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R
Query Conservation
Alig confidence																								.																																.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																								.																																.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		W	R	R	G	E	L	K	S	P	K	V	L	K	G	H	D	D	H	V	I	T	C	.	L	Q	F	C	G	N	R	I	V	S	G	S	D	D	N	T	L	K	V	W	S	A	V	T	G	K	C	L	R	T	L	.	.	.	.	.	.	.	.	.	.	V	G	H	T	G	G	V	W	S	S	Q	M	.	.	R	D
Template Known Secondary structure					S											S	T	T	S					.					T	T							T	T	S							T	T	T								.	.	.	.	.	.	.	.	.	.				S	S								.	.		T
Template Predicted Secondary structure																								.																																.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		2365	.	.	.	.	2370	.	.	.	.	.	.	.	.	.	2380	.	.	.	.	.	.		.	.	.	2390	.	.	.	.	.	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.											.	.	2420	.	.	.	.	.	.	.	.	.			2430	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	I	I	S	G	S	T	D	R	T	L	K	V	W	N	A	E	T	G	E	C	I	H	T	L	Y	G	H	T	S	T	V	R	C	M	H	L	H	E	K	R	V	V	S	G	S	R	D	A	T	L	R	V	W	D	I	E	T	G	Q	C	L	H	V	L	M	G	H	V	A	A	V	R	C	V	Q	Y	D	G
Template Known Secondary structure		T							T	T	S							T	T	T											S	S									T	T							T	T	S							T	T	T											S	S									S
Template Predicted Secondary structure
Template SS confidence
		2432	.	.	.	.	.	.	.	2440	.	.	.	.	.	.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.	.	.	.	2470	.	.	.	.	.	.	.	.	.	2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation																			.	.	.	.	.	.	.																																			.	.	.	.
Template Sequence		R	R	V	V	S	G	A	Y	D	F	M	V	K	V	W	D	P	.	.	.	.	.	.	.	E	T	E	T	C	L	H	T	L	Q	G	H	T	N	R	V	Y	S	L	Q	F	D	G	I	H	V	V	S	G	S	L	D	T	S	.	.	.	.	I	R	V	W	D	V	E	T	G	N	C	I	H	T	L	T	G	H
Template Known Secondary structure		S							T	T	S							G	.	.	.	.	.	.	.	G	G	T										S	S									S	S							T	T	S		.	.	.	.						T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.																																			.	.	.	.
Template SS confidence
		2512	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.	.								.	2530	.	.	.	.	.	.	.	.	.	2540	.	.	.	.	.	.	.	.	.	2550	.	.	.	.	.	.	.	.	.	2560	.	.					.	.	.	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	.	.	.	.	.	.	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	L	T	S	G	M	E	L	K	D	N	I	L	V	S	G	N	A	D	S	T	V	K	I	W	D	I	K	T	G	Q	C	L	Q	T	L	Q	G	P	N	K	H	Q	S	A	V	T	C	L	Q	F	N	K	N	F	V	I	T	S	S	D	D	G	T	V	K	L	W	D	L	K	T	G	E	F	I	R	N	L
Template Known Secondary structure			S									T	T							T	T	S							T	T	T									S	T	T			S	S									S	S							T	T	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		2581	.	.	.	.	.	.	.	.	2590	.	.	.	.	.	.	.	.	.	2600	.	.	.	.	.	.	.	.	.	2610	.	.	.	.	.	.	.	.	.	2620	.	.	.	.	.	.	.	.	.	2630	.	.	.	.	.	.	.	.	.	2640	.	.	.	.	.	.	.	.	.	2650	.	.	.	.	.	.	.	.	.	2660
		333	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		R	I	L	.	.	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S	S	G
Query Conservation					.	.
Alig confidence					.	.																			.
Template Conservation																									.
Template Sequence		V	T	L	E	S	G	G	S	G	G	V	V	W	R	I	R	A	S	N	T	K	L	V	.	C	A	V	G	S	R	N	G
Template Known Secondary structure					T	T	G	G	G	T										S	S				.						S	S	S
Template Predicted Secondary structure																									.
Template SS confidence
		2661	.	.	.	.	.	.	.	.	2670	.	.	.	.	.	.	.	.	.	2680	.	.	.		.	.	.	.	.	.	2690	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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