Job Description P75804 Confidence 98.88% Date Thu Jan 5 12:14:23 GMT 2012 Rank 125 Aligned Residues 290 % Identity 9% Template c2oitA_ PDB info PDB header:oncoprotein Chain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																									.																							.
Query SS confidence																				.	.	.	.																									.																							.
Query Sequence		D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	.	.	.	.	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	.	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	.	R	I	W	L	S	Y	S	E	V	G
Query Conservation																				.	.	.	.																									.																							.
Alig confidence																				.	.	.	.																									.																							.
Template Conservation
Template Sequence		F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	K	Q	Q	K	R	P	F	A	Y	H	K	L	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D	G
Template Known Secondary structure		S									T	T	S										T	T	T															T	T		S	S				S								S	G	G	G	S								S	S		T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q	G	K	L	V	R	L	T	D
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		S	I	A	V	L	Q	V	T	E	T	V	K	V	C	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	.	Q	L	A	V	G	K	Q	N	G	T	V	V	Q	Y	L	P	T	L	Q	E	K	K	V	I	P	C	P	P
Template Known Secondary structure									S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G									T	T	S	S	.							T	T	S							T	T											T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Sequence		F	Y	E	S	D	H	P	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	D	V	L	W	I	G	T	Y	V	F	A	I	V	Y	A	A	A	D	G	T	L	E	T	S	P	D	V	V	.	.	.	.	.	M	A	L	L	P	K	K	E	E	K	H	P	E	I	F	V	N	F
Template Known Secondary structure		T			T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T									T	T			S	S	S						.	.	.	.	.							T	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.																			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		M	E	P	C	Y	G	S	C	T	E	R	Q	H	H	Y	Y	L	S	Y	I	E	E	W	D	L	V	L	A	A	S	A	A	.	.	S	T	E	V	S	I	L	A	R	Q	S	D	Q	I	N	W	E	S	W	L	L	E	D	S	S	R	A	E	L	P	V	T	D	K	S	D	D	S	L	P	M	G	V	V	V	D
Template Known Secondary structure				S	S					S	S	S										G	G	G	T							T	T	.	.		S	B								T	T	S	S									G	G	G			B			B		T	T	S		B
Template Predicted Secondary structure																																		.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		349	350	.	.																	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	V	L	T	D	E	S	S	G	E	L	L	K	V	S
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	N	Q	V	E	I	T	I	S	D	E	K	T	L	P	P	A	P	V	L	M	L	L	S	T	D	G	V	L	C	P	F	Y	M	I
Template Known Secondary structure												T	T														T	T	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions