Job Description P75804 Confidence 99.36% Date Thu Jan 5 12:14:23 GMT 2012 Rank 69 Aligned Residues 254 % Identity 11% Template c2oajA_ PDB info PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		A	T	V	N	V	E	V	L	Q	.	.	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H	W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I
Query Conservation											.	.
Alig confidence											.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	F	S	L	A	E	T	N	K	Y	G	M	S	S	K	P	I	A	A	A	F	D	F	T	Q	N	L	L	A	I	A	T	V	T	G	E	V	H	I	Y	G	Q	Q	Q	V	E	V	V	I	K	L	.	.	.	.	.	.	.	.	.	.	.	E	D	R	S	A	I	K	E	M	R	F	V	K	G	I	Y	L
Template Known Secondary structure		T	T												S	S									T	T	T	T							T	T	S							S	T	T								.	.	.	.	.	.	.	.	.	.	.	S	S											T	T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G	R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q
Query Conservation
Alig confidence		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	V	V	I	N	A	K	D	T	V	Y	V	L	S	L	Y	S	Q	K	V	L	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	V	P	G	K	I	T	S	I	D	T	D	A	S	L	D	.	W	M	L	I	G	L	Q	N	G	S	M	I	V	Y	D	I	D	R	D	Q
Template Known Secondary structure		.					T	T								T	T	T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S									T	T		S	.							T	T	S							T	T	T	T
Template Predicted Secondary structure		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
			133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E	I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		L	S	S	F	K	L	D	N	L	Q	K	S	S	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	R	L	S	P	I	V	S	I	Q	W	N	P	R	D	I	G	T	V	L	I	.	.	S	Y	E	Y	V	T	L	T	Y	S	L	V	E	N	E	I	K	Q	S	F	I	Y	E	L	P	P	F
Template Known Secondary structure															T		.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S												T	T								.	.			S	S							T	T	T	T										B		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.														.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K	F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	G	G	D	F	S	E	K	T	N	E	K	R	T	P	K	V	I	Q	S	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	N	S	L	H	I	I	T	I	H	E	D	N	S	L	V	F	W	D	A	N	S	G	H	M	I	M	A	R	T	V	F	E	T	E	I	N
Template Known Secondary structure					S	T	T				T	T	S		B										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S							T	T								T	T	T									S	S		S		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		341	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		318	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions